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X-RAY DIFFRACTION
Materials and Methods page
4F7O
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 298.0
    Details PEG3350, KSCN, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 161.73 α = 90
    b = 46.51 β = 100.27
    c = 71.26 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type ADSC QUANTUM 315r
    Collection Date 2011-02-19
     
    Diffraction Radiation
    Monochromator Double crystal, Si(111) or Si(311)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength List 0.979408
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.6
    Resolution(Low) 29
    Number Reflections(All) 16305
    Number Reflections(Observed) 15164
    Percent Possible(Observed) 93.0
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 68.2
    R Merge I(Observed) 0.367
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.6
    Resolution(Low) 29.0
    Cut-off Sigma(F) 0.16
    Number of Reflections(all) 16305
    Number of Reflections(Observed) 15092
    Number of Reflections(R-Free) 897
    Percent Reflections(Observed) 92.24
    R-Factor(Observed) 0.2194
    R-Work 0.2157
    R-Free 0.2742
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -0.5444
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.0141
    Anisotropic B[2][2] -2.1204
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.6648
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.7628
    Number of Reflections(R-Free) 104
    Number of Reflections(R-Work) 1709
    R-Factor(R-Work) 0.3172
    R-Factor(R-Free) 0.4337
    Percent Reflections(Observed) 68.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7628
    Shell Resolution(Low) 2.976
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2413
    R-Factor(R-Work) 0.2864
    R-Factor(R-Free) 0.3566
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.976
    Shell Resolution(Low) 3.2751
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2509
    R-Factor(R-Work) 0.2315
    R-Factor(R-Free) 0.3117
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2751
    Shell Resolution(Low) 3.7483
    Number of Reflections(R-Free) 171
    Number of Reflections(R-Work) 2487
    R-Factor(R-Work) 0.2182
    R-Factor(R-Free) 0.2852
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7483
    Shell Resolution(Low) 4.7194
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2521
    R-Factor(R-Work) 0.1797
    R-Factor(R-Free) 0.2215
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7194
    Shell Resolution(Low) 29.0
    Number of Reflections(R-Free) 176
    Number of Reflections(R-Work) 2556
    R-Factor(R-Work) 0.2046
    R-Factor(R-Free) 0.2592
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.075
    f_dihedral_angle_d 18.536
    f_angle_d 1.161
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3728
    Nucleic Acid Atoms 0
    Heterogen Atoms 11
    Solvent Atoms 52
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution Superflip
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building Superflip
    data collection ADSC version: Quantum