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X-RAY DIFFRACTION
Materials and Methods page
4F6P
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.5
    Temperature 291.0
    Details 0.8M potassium phosphate monobasic, 0.8M sodium phosphate monobasic, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 114.4 α = 90
    b = 114.4 β = 90
    c = 61.68 γ = 120
     
    Space Group
    Space Group Name:    H 3
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX325HE
    Collection Date 2011-10-12
     
    Diffraction Radiation
    Monochromator Si 111 CHANNEL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.9793
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 3.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.62
    Resolution(Low) 50
    Number Reflections(All) 38405
    Number Reflections(Observed) 37675
    Percent Possible(Observed) 98.1
     
    High Resolution Shell Details
    Resolution(High) 1.62
    Resolution(Low) 1.68
    Percent Possible(All) 93.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.619
    Resolution(Low) 32.009
    Cut-off Sigma(F) 1.96
    Number of Reflections(all) 38405
    Number of Reflections(Observed) 37674
    Number of Reflections(R-Free) 1870
    Percent Reflections(Observed) 98.26
    R-Factor(All) 0.179
    R-Factor(Observed) 0.179
    R-Work 0.1786
    R-Free 0.1853
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -2.791
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -2.791
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 5.582
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6191
    Shell Resolution(Low) 1.6629
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.2726
    R-Factor(R-Free) 0.3403
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6629
    Shell Resolution(Low) 1.7118
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2778
    R-Factor(R-Work) 0.2362
    R-Factor(R-Free) 0.2806
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7118
    Shell Resolution(Low) 1.767
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2788
    R-Factor(R-Work) 0.2123
    R-Factor(R-Free) 0.2181
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.767
    Shell Resolution(Low) 1.8302
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2809
    R-Factor(R-Work) 0.1921
    R-Factor(R-Free) 0.1928
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8302
    Shell Resolution(Low) 1.9035
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 2782
    R-Factor(R-Work) 0.2015
    R-Factor(R-Free) 0.1905
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9035
    Shell Resolution(Low) 1.9901
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2826
    R-Factor(R-Work) 0.1943
    R-Factor(R-Free) 0.2153
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9901
    Shell Resolution(Low) 2.095
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 2794
    R-Factor(R-Work) 0.1772
    R-Factor(R-Free) 0.1985
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.095
    Shell Resolution(Low) 2.2262
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2788
    R-Factor(R-Work) 0.1773
    R-Factor(R-Free) 0.21
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2262
    Shell Resolution(Low) 2.398
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2780
    R-Factor(R-Work) 0.1787
    R-Factor(R-Free) 0.1925
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.398
    Shell Resolution(Low) 2.6393
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.1743
    R-Factor(R-Free) 0.1867
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6393
    Shell Resolution(Low) 3.0209
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2697
    R-Factor(R-Work) 0.1845
    R-Factor(R-Free) 0.1863
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0209
    Shell Resolution(Low) 3.8051
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2684
    R-Factor(R-Work) 0.1631
    R-Factor(R-Free) 0.164
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8051
    Shell Resolution(Low) 32.0152
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 2604
    R-Factor(R-Work) 0.1634
    R-Factor(R-Free) 0.1602
    Percent Reflections(Observed) 94.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.074
    f_dihedral_angle_d 15.278
    f_angle_d 1.061
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2043
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 225
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHASER
    data collection CBASS