POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4F6C
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details 0.2 M tri-sodium citrate, 0.1 M HEPES pH 7.5, 10% isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 105.7 α = 90
    b = 106.45 β = 90
    c = 124.88 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2010-10-05
     
    Diffraction Radiation
    Monochromator Double silicon(111) crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 0.9801
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.8
    Resolution(Low) 50
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.065
    Redundancy 7.6
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Resolution(Low) 2.9
    Percent Possible(All) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.812
    Resolution(Low) 44.427
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 33500
    Number of Reflections(Observed) 33500
    Number of Reflections(R-Free) 1935
    Percent Reflections(Observed) 95.86
    R-Factor(All) 0.2078
    R-Factor(Observed) 0.2078
    R-Work 0.2057
    R-Free 0.2427
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 26.0772
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -16.0196
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -13.7084
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.812
    Shell Resolution(Low) 2.8822
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 1985
    R-Factor(R-Work) 0.341
    R-Factor(R-Free) 0.4309
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8822
    Shell Resolution(Low) 2.9601
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2137
    R-Factor(R-Work) 0.2908
    R-Factor(R-Free) 0.3169
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9601
    Shell Resolution(Low) 3.0472
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2149
    R-Factor(R-Work) 0.2684
    R-Factor(R-Free) 0.2975
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0472
    Shell Resolution(Low) 3.1456
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2180
    R-Factor(R-Work) 0.2465
    R-Factor(R-Free) 0.2983
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1456
    Shell Resolution(Low) 3.2579
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2199
    R-Factor(R-Work) 0.2362
    R-Factor(R-Free) 0.2587
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2579
    Shell Resolution(Low) 3.3883
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2216
    R-Factor(R-Work) 0.23
    R-Factor(R-Free) 0.3169
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3883
    Shell Resolution(Low) 3.5425
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2234
    R-Factor(R-Work) 0.2053
    R-Factor(R-Free) 0.2289
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5425
    Shell Resolution(Low) 3.7292
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2275
    R-Factor(R-Work) 0.1933
    R-Factor(R-Free) 0.2518
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7292
    Shell Resolution(Low) 3.9627
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2292
    R-Factor(R-Work) 0.1851
    R-Factor(R-Free) 0.2356
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9627
    Shell Resolution(Low) 4.2684
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2310
    R-Factor(R-Work) 0.1657
    R-Factor(R-Free) 0.1996
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2684
    Shell Resolution(Low) 4.6975
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2353
    R-Factor(R-Work) 0.1587
    R-Factor(R-Free) 0.2075
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6975
    Shell Resolution(Low) 5.3763
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2369
    R-Factor(R-Work) 0.1843
    R-Factor(R-Free) 0.2248
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3763
    Shell Resolution(Low) 6.7697
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2394
    R-Factor(R-Work) 0.2312
    R-Factor(R-Free) 0.2538
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.7697
    Shell Resolution(Low) 44.4322
    Number of Reflections(R-Free) 154
    Number of Reflections(R-Work) 2472
    R-Factor(R-Work) 0.2134
    R-Factor(R-Free) 0.2309
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.08
    f_dihedral_angle_d 15.517
    f_angle_d 1.177
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5541
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 4
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phenix
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building Phenix
    data collection CBASS