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X-RAY DIFFRACTION
Materials and Methods page
4F60
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.5
    Temperature 277.0
    Details 0.1M BisTris propane pH6.5, 0.2M Sodium Fluoride,20% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 52.02 α = 90
    b = 69.93 β = 90
    c = 85.35 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2012-01-18
     
    Diffraction Radiation
    Monochromator Si 111 double crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength List 0.978
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.45
    Resolution(Low) 50
    Number Reflections(All) 56080
    Number Reflections(Observed) 53781
    Percent Possible(Observed) 95.9
    R Merge I(Observed) 0.033
    B(Isotropic) From Wilson Plot 17.6
    Redundancy 6.9
     
    High Resolution Shell Details
    Resolution(High) 1.45
    Resolution(Low) 1.5
    Percent Possible(All) 74.2
    R Merge I(Observed) 0.258
    Mean I Over Sigma(Observed) 3.2
    Redundancy 4.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.45
    Resolution(Low) 29.02
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 53223
    Number of Reflections(Observed) 50998
    Number of Reflections(R-Free) 2721
    Percent Reflections(Observed) 95.82
    R-Factor(All) 0.15108
    R-Factor(Observed) 0.15108
    R-Work 0.15
    R-Free 0.17109
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 28.683
    Anisotropic B[1][1] 0.81
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.14
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.66
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.45
    Shell Resolution(Low) 1.486
    Number of Reflections(R-Free) 160
    Number of Reflections(R-Work) 2698
    R-Factor(R-Work) 0.179
    R-Factor(R-Free) 0.225
    Percent Reflections(Observed) 70.05
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.677
    r_scbond_it 1.745
    r_mcangle_it 1.09
    r_mcbond_it 0.754
    r_nbd_refined 0.209
    r_gen_planes_refined 0.008
    r_chiral_restr 0.096
    r_dihedral_angle_4_deg 19.896
    r_dihedral_angle_3_deg 11.636
    r_dihedral_angle_2_deg 33.438
    r_dihedral_angle_1_deg 5.484
    r_angle_refined_deg 1.467
    r_bond_refined_d 0.012
    r_nbtor_refined 0.321
    r_xyhbond_nbd_refined 0.152
    r_symmetry_vdw_refined 0.15
    r_symmetry_hbond_refined 0.221
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2342
    Nucleic Acid Atoms 0
    Heterogen Atoms 1
    Solvent Atoms 500
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MarDB
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution MolRep
    Structure Refinement REFMAC 5.3.0037
     
    Software
    refinement REFMAC version: 5.3.0037
    model building MolRep
    data collection MarDB