POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4F5Z
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 279.0
    Details 35 % (w/v) PEG4000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 279K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.66 α = 115.28
    b = 44.49 β = 98.61
    c = 46.39 γ = 109.55
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2012-01-18
     
    Diffraction Radiation
    Monochromator Si 111 double crystal
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength List 0.978
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.2
    Resolution(Low) 50
    Number Reflections(Observed) 78455
    Percent Possible(Observed) 91.7
    R Merge I(Observed) 0.035
    B(Isotropic) From Wilson Plot 7.6
    Redundancy 2.6
     
    High Resolution Shell Details
    Resolution(High) 1.2
    Resolution(Low) 1.24
    Percent Possible(All) 72.1
    R Merge I(Observed) 0.191
    Mean I Over Sigma(Observed) 2.5
    Redundancy 1.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.2
    Resolution(Low) 17.17
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 74518
    Number of Reflections(R-Free) 3937
    Percent Reflections(Observed) 91.63
    R-Factor(All) 0.12185
    R-Factor(Observed) 0.12185
    R-Work 0.12007
    R-Free 0.15495
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 14.122
    Anisotropic B[1][1] 0.19
    Anisotropic B[1][2] 0.09
    Anisotropic B[1][3] 0.17
    Anisotropic B[2][2] 0.23
    Anisotropic B[2][3] 0.19
    Anisotropic B[3][3] -0.14
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.2
    Shell Resolution(Low) 1.23
    Number of Reflections(R-Free) 209
    Number of Reflections(R-Work) 4150
    R-Factor(R-Work) 0.155
    R-Factor(R-Free) 0.176
    Percent Reflections(Observed) 69.16
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 4.208
    r_sphericity_free 5.659
    r_rigid_bond_restr 1.777
    r_scangle_it 3.365
    r_scbond_it 2.57
    r_mcangle_it 1.819
    r_mcbond_it 1.296
    r_nbd_refined 0.211
    r_gen_planes_refined 0.009
    r_chiral_restr 0.1
    r_dihedral_angle_4_deg 18.44
    r_dihedral_angle_3_deg 12.094
    r_dihedral_angle_2_deg 32.803
    r_dihedral_angle_1_deg 5.773
    r_angle_refined_deg 1.531
    r_bond_refined_d 0.012
    r_nbtor_refined 0.323
    r_xyhbond_nbd_refined 0.16
    r_symmetry_vdw_refined 0.171
    r_symmetry_hbond_refined 0.163
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2350
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 745
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MarDB
    Data Reduction (intensity integration) HKL-3000
    Data Reduction (data scaling) HKL-3000
    Structure Solution MolRep
    Structure Refinement REFMAC 5.3.0037
     
    Software
    refinement REFMAC version: 5.3.0037
    model building MolRep
    data collection MarDB