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X-RAY DIFFRACTION
Materials and Methods page
4F5U
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 293.0
    Details 80% Tacsimate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 89.25 α = 90
    b = 89.25 β = 90
    c = 134.8 γ = 120
     
    Space Group
    Space Group Name:    P 61
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details mirrors
    Collection Date 2011-08-21
     
    Diffraction Radiation
    Monochromator Double crystal monochromator Si-111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type EMBL/DESY, HAMBURG BEAMLINE X12
    Wavelength List 0.9320
    Site EMBL/DESY, HAMBURG
    Beamline X12
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.04
    Resolution(Low) 50
    Number Reflections(Observed) 38668
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.11
    Redundancy 7.0
     
    High Resolution Shell Details
    Resolution(High) 2.04
    Resolution(Low) 2.11
    Percent Possible(All) 99.2
    R Merge I(Observed) 0.639
    Mean I Over Sigma(Observed) 2.1
    Redundancy 5.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.04
    Resolution(Low) 50.0
    Number of Reflections(all) 38668
    Number of Reflections(Observed) 37399
    Number of Reflections(R-Free) 1211
    Percent Reflections(Observed) 99.84
    R-Factor(Observed) 0.19756
    R-Work 0.19612
    R-Free 0.24294
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 41.582
    Anisotropic B[1][1] 1.99
    Anisotropic B[1][2] 0.99
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.99
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.98
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.04
    Shell Resolution(Low) 2.093
    Number of Reflections(R-Free) 87
    Number of Reflections(R-Work) 2732
    R-Factor(R-Work) 0.33
    R-Factor(R-Free) 0.366
    Percent Reflections(Observed) 98.84
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.946
    r_scbond_it 2.557
    r_mcangle_it 1.445
    r_mcbond_it 0.825
    r_gen_planes_refined 0.009
    r_chiral_restr 0.11
    r_dihedral_angle_4_deg 22.427
    r_dihedral_angle_3_deg 16.735
    r_dihedral_angle_2_deg 34.897
    r_dihedral_angle_1_deg 6.225
    r_angle_refined_deg 1.966
    r_bond_refined_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4609
    Nucleic Acid Atoms 0
    Heterogen Atoms 59
    Solvent Atoms 345
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building MOLREP
    data collection HKL-2000