POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4F5S
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 20% mmePEG 5000, 0.25M ammonium chloride, 0.1M MES 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 217.8 α = 90
    b = 44.99 β = 114.13
    c = 143.06 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details mirrors
    Collection Date 2009-05-09
     
    Diffraction Radiation
    Monochromator double crystal monochromator Si-111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type BESSY BEAMLINE 14.2
    Wavelength List 0.9184
    Site BESSY
    Beamline 14.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.47
    Resolution(Low) 40
    Number Reflections(Observed) 43883
    Percent Possible(Observed) 95.2
    R Merge I(Observed) 0.091
    B(Isotropic) From Wilson Plot 66.4
    Redundancy 4.3
     
    High Resolution Shell Details
    Resolution(High) 2.47
    Resolution(Low) 2.57
    Percent Possible(All) 84.9
    R Merge I(Observed) 0.549
    Mean I Over Sigma(Observed) 1.75
    Redundancy 3.0
    Number Unique Reflections(All) 3856
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.47
    Resolution(Low) 40.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 43883
    Number of Reflections(Observed) 42357
    Number of Reflections(R-Free) 1369
    Percent Reflections(Observed) 94.61
    R-Factor(All) 0.19898
    R-Factor(Observed) 0.19884
    R-Work 0.1969
    R-Free 0.25877
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 72.554
    Anisotropic B[1][1] 0.58
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -2.82
    Anisotropic B[2][2] -1.6
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.28
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.471
    Shell Resolution(Low) 2.535
    Number of Reflections(R-Free) 78
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.27
    R-Factor(R-Free) 0.337
    Percent Reflections(Observed) 81.48
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.604
    r_scbond_it 2.402
    r_mcangle_it 1.362
    r_mcbond_it 0.727
    r_gen_planes_refined 0.009
    r_chiral_restr 0.131
    r_dihedral_angle_4_deg 23.254
    r_dihedral_angle_3_deg 20.832
    r_dihedral_angle_2_deg 39.571
    r_dihedral_angle_1_deg 7.082
    r_angle_refined_deg 2.006
    r_bond_refined_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 9306
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 327
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER
    data collection HKL-2000