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X-RAY DIFFRACTION
Materials and Methods page
4F5R
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 291.0
    Details 50mM Imidazole, 350mM Sodium Acetate, 16.5% PEG3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 55.03 α = 90
    b = 79.45 β = 96.96
    c = 102.09 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 92
    Details mirrors
    Collection Date 2011-06-21
     
    Diffraction Radiation
    Monochromator mirrors VarimaxHF
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54178
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.2
    Resolution(Low) 50
    Number Reflections(All) 263254
    Number Reflections(Observed) 263254
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.136
    B(Isotropic) From Wilson Plot 31.2
    Redundancy 5.9
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.28
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.703
    Mean I Over Sigma(Observed) 2.73
    Redundancy 5.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 21.36
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 74621
    Number of Reflections(Observed) 74621
    Number of Reflections(R-Free) 1393
    Percent Reflections(Observed) 85.78
    R-Factor(All) 0.2122
    R-Factor(Observed) 0.2122
    R-Work 0.2097
    R-Free 0.2776
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -5.8979
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.2014
    Anisotropic B[2][2] -0.3574
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.2553
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.24
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 3615
    R-Factor(R-Work) 0.2626
    R-Factor(R-Free) 0.3502
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.24
    Shell Resolution(Low) 2.283
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 3371
    R-Factor(R-Work) 0.2572
    R-Factor(R-Free) 0.3312
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.283
    Shell Resolution(Low) 2.3296
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 3562
    R-Factor(R-Work) 0.2494
    R-Factor(R-Free) 0.3378
    Percent Reflections(Observed) 81.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3296
    Shell Resolution(Low) 2.3801
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 3677
    R-Factor(R-Work) 0.2395
    R-Factor(R-Free) 0.3133
    Percent Reflections(Observed) 82.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3801
    Shell Resolution(Low) 2.4354
    Number of Reflections(R-Free) 128
    Number of Reflections(R-Work) 3385
    R-Factor(R-Work) 0.2558
    R-Factor(R-Free) 0.2795
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4354
    Shell Resolution(Low) 2.4962
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 3452
    R-Factor(R-Work) 0.2546
    R-Factor(R-Free) 0.3663
    Percent Reflections(Observed) 78.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4962
    Shell Resolution(Low) 2.5636
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 3353
    R-Factor(R-Work) 0.2774
    R-Factor(R-Free) 0.4073
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5636
    Shell Resolution(Low) 2.6389
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 3425
    R-Factor(R-Work) 0.2616
    R-Factor(R-Free) 0.3453
    Percent Reflections(Observed) 78.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6389
    Shell Resolution(Low) 2.724
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 3486
    R-Factor(R-Work) 0.2578
    R-Factor(R-Free) 0.3461
    Percent Reflections(Observed) 79.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.724
    Shell Resolution(Low) 2.8211
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 3467
    R-Factor(R-Work) 0.251
    R-Factor(R-Free) 0.3311
    Percent Reflections(Observed) 77.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8211
    Shell Resolution(Low) 2.9338
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 3484
    R-Factor(R-Work) 0.2422
    R-Factor(R-Free) 0.2968
    Percent Reflections(Observed) 79.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9338
    Shell Resolution(Low) 3.0669
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 3624
    R-Factor(R-Work) 0.23
    R-Factor(R-Free) 0.3261
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0669
    Shell Resolution(Low) 3.2281
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 4189
    R-Factor(R-Work) 0.2276
    R-Factor(R-Free) 0.3185
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2281
    Shell Resolution(Low) 3.4296
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 4302
    R-Factor(R-Work) 0.2152
    R-Factor(R-Free) 0.3107
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4296
    Shell Resolution(Low) 3.6931
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 4422
    R-Factor(R-Work) 0.2143
    R-Factor(R-Free) 0.2872
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6931
    Shell Resolution(Low) 4.0625
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 4200
    R-Factor(R-Work) 0.1709
    R-Factor(R-Free) 0.219
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0625
    Shell Resolution(Low) 4.6451
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 4222
    R-Factor(R-Work) 0.1474
    R-Factor(R-Free) 0.2134
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.6451
    Shell Resolution(Low) 5.8325
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 4255
    R-Factor(R-Work) 0.1756
    R-Factor(R-Free) 0.208
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.8325
    Shell Resolution(Low) 21.3611
    Number of Reflections(R-Free) 167
    Number of Reflections(R-Work) 4406
    R-Factor(R-Work) 0.1957
    R-Factor(R-Free) 0.2319
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.062
    f_dihedral_angle_d 21.512
    f_angle_d 1.1
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5152
    Nucleic Acid Atoms 1264
    Heterogen Atoms 68
    Solvent Atoms 414
     
     
  •   Software and Computing Hide
    Computing
    Data Collection StructureStudio
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building CNS
    data collection StructureStudio