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X-RAY DIFFRACTION
Materials and Methods page
4F5Q
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 291.0
    Details 50mM Imidazole, 350mM Sodium Acetate, 18% PEG3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 55.14 α = 90
    b = 77.63 β = 114.2
    c = 54.95 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RIGAKU SATURN 92
    Details mirrors
    Collection Date 2011-09-02
     
    Diffraction Radiation
    Monochromator mirrors VarimaxHF
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54178
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.25
    Resolution(Low) 28
    Number Reflections(All) 112322
    Number Reflections(Observed) 112322
    Percent Possible(Observed) 98.2
    R Merge I(Observed) 0.098
    B(Isotropic) From Wilson Plot 36.11
    Redundancy 5.7
     
    High Resolution Shell Details
    Resolution(High) 2.25
    Resolution(Low) 2.33
    Percent Possible(All) 99.0
    R Merge I(Observed) 0.599
    Mean I Over Sigma(Observed) 2.38
    Redundancy 3.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.25
    Resolution(Low) 21.105
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 17616
    Number of Reflections(Observed) 17616
    Number of Reflections(R-Free) 1719
    Percent Reflections(Observed) 86.93
    R-Factor(All) 0.2206
    R-Factor(Observed) 0.2206
    R-Work 0.214
    R-Free 0.2818
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2456
    Shell Resolution(Low) 2.3115
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 969
    R-Factor(R-Work) 0.3698
    R-Factor(R-Free) 0.4379
    Percent Reflections(Observed) 64.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3115
    Shell Resolution(Low) 2.3861
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 1267
    R-Factor(R-Work) 0.2962
    R-Factor(R-Free) 0.3954
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3861
    Shell Resolution(Low) 2.4712
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 1226
    R-Factor(R-Work) 0.299
    R-Factor(R-Free) 0.4426
    Percent Reflections(Observed) 82.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4712
    Shell Resolution(Low) 2.57
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 1274
    R-Factor(R-Work) 0.2936
    R-Factor(R-Free) 0.3798
    Percent Reflections(Observed) 82.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.57
    Shell Resolution(Low) 2.6867
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1272
    R-Factor(R-Work) 0.2434
    R-Factor(R-Free) 0.3189
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6867
    Shell Resolution(Low) 2.8281
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 1284
    R-Factor(R-Work) 0.2508
    R-Factor(R-Free) 0.3343
    Percent Reflections(Observed) 85.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8281
    Shell Resolution(Low) 3.0048
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 1362
    R-Factor(R-Work) 0.2318
    R-Factor(R-Free) 0.3222
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0048
    Shell Resolution(Low) 3.236
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 1448
    R-Factor(R-Work) 0.2162
    R-Factor(R-Free) 0.2923
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.236
    Shell Resolution(Low) 3.5603
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 1474
    R-Factor(R-Work) 0.2064
    R-Factor(R-Free) 0.2566
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5603
    Shell Resolution(Low) 4.0723
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 1390
    R-Factor(R-Work) 0.1645
    R-Factor(R-Free) 0.257
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0723
    Shell Resolution(Low) 5.1185
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 1373
    R-Factor(R-Work) 0.1558
    R-Factor(R-Free) 0.1908
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1185
    Shell Resolution(Low) 21.1055
    Number of Reflections(R-Free) 172
    Number of Reflections(R-Work) 1558
    R-Factor(R-Work) 0.223
    R-Factor(R-Free) 0.2689
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.055
    f_dihedral_angle_d 19.863
    f_angle_d 0.981
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2548
    Nucleic Acid Atoms 635
    Heterogen Atoms 34
    Solvent Atoms 107
     
     
  •   Software and Computing Hide
    Computing
    Data Collection StructureStudio
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CNS
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building CNS
    data collection StructureStudio