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X-RAY DIFFRACTION
Materials and Methods page
4F5K
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.8
    Temperature 277.0
    Details 8% PEG 4000, 0.1 M Sodium Acetate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 59.3 α = 90
    b = 102.35 β = 90
    c = 138.51 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 85
     
    Diffraction Detector
    Detector CCD
    Type BRUKER SMART 6000
    Details Mirrors
    Collection Date 2010-07-27
     
    Diffraction Radiation
    Monochromator Osmic Mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RU300
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.2
    Resolution(Low) 100
    Number Reflections(All) 43677
    Number Reflections(Observed) 43617
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.0984
    B(Isotropic) From Wilson Plot 22.9
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 2.2
    Resolution(Low) 2.3
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.335
    Mean I Over Sigma(Observed) 3.0
    R-Sym I(Observed) 0.335
    Redundancy 4.24
    Number Unique Reflections(All) 5359
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.2
    Resolution(Low) 42.087
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 43538
    Number of Reflections(R-Free) 2117
    Percent Reflections(Observed) 99.86
    R-Factor(Observed) 0.1831
    R-Work 0.1809
    R-Free 0.2268
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.2512
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2705
    R-Factor(R-Work) 0.2197
    R-Factor(R-Free) 0.3247
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2512
    Shell Resolution(Low) 2.3075
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2712
    R-Factor(R-Work) 0.2199
    R-Factor(R-Free) 0.301
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3075
    Shell Resolution(Low) 2.3699
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2721
    R-Factor(R-Work) 0.2174
    R-Factor(R-Free) 0.2646
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3699
    Shell Resolution(Low) 2.4396
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2706
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2583
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4396
    Shell Resolution(Low) 2.5183
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2739
    R-Factor(R-Work) 0.1999
    R-Factor(R-Free) 0.2352
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5183
    Shell Resolution(Low) 2.6083
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2738
    R-Factor(R-Work) 0.1928
    R-Factor(R-Free) 0.2716
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6083
    Shell Resolution(Low) 2.7127
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2727
    R-Factor(R-Work) 0.1936
    R-Factor(R-Free) 0.2586
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7127
    Shell Resolution(Low) 2.8362
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2739
    R-Factor(R-Work) 0.1865
    R-Factor(R-Free) 0.2414
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8362
    Shell Resolution(Low) 2.9857
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2783
    R-Factor(R-Work) 0.1836
    R-Factor(R-Free) 0.2381
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9857
    Shell Resolution(Low) 3.1727
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.1825
    R-Factor(R-Free) 0.2313
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1727
    Shell Resolution(Low) 3.4175
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2779
    R-Factor(R-Work) 0.1836
    R-Factor(R-Free) 0.2072
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4175
    Shell Resolution(Low) 3.7613
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.1637
    R-Factor(R-Free) 0.2239
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7613
    Shell Resolution(Low) 4.305
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2786
    R-Factor(R-Work) 0.152
    R-Factor(R-Free) 0.1481
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.305
    Shell Resolution(Low) 5.4221
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2823
    R-Factor(R-Work) 0.1532
    R-Factor(R-Free) 0.1932
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4221
    Shell Resolution(Low) 42.0945
    Number of Reflections(R-Free) 126
    Number of Reflections(R-Work) 2963
    R-Factor(R-Work) 0.1854
    R-Factor(R-Free) 0.22
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.07
    f_dihedral_angle_d 13.415
    f_angle_d 1.085
    f_bond_d 0.007
     
    Coordinate Error
    Luzzati Sigma A(Observed) 0.53
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 6172
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 788
     
     
  •   Software and Computing Hide
    Computing
    Data Collection PROTEUM PLUS
    Data Reduction (intensity integration) PROTEUM PLUS
    Data Reduction (data scaling) PROTEUM PLUS
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)
    model building PHASER
    data collection PROTEUM version: PLUS