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X-RAY DIFFRACTION
Materials and Methods page
4F58
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 296.0
    Details 28% PEG 4K, 0.17 M Li2SO4, 0.085 M Tris pH 8.5, and 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 296K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 73.4 α = 90
    b = 126.41 β = 90.08
    c = 120.08 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MAR scanner 300 mm plate
    Collection Date 2011-11-27
     
    Diffraction Radiation
    Monochromator Mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 23-ID-D
    Wavelength List 1.03319
    Site APS
    Beamline 23-ID-D
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.49
    Resolution(Low) 46.5
    Number Reflections(All) 75889
    Number Reflections(Observed) 76041
    Percent Possible(Observed) 99.8
     
    High Resolution Shell Details
    Resolution(High) 2.488
    Resolution(Low) 2.54
    Percent Possible(All) 99.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.488
    Resolution(Low) 46.5
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 76841
    Number of Reflections(Observed) 75512
    Number of Reflections(R-Free) 3776
    Percent Reflections(Observed) 98.27
    R-Factor(Observed) 0.2105
    R-Work 0.208
    R-Free 0.2564
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -7.082
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.3747
    Anisotropic B[2][2] -6.7244
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.8064
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4882
    Shell Resolution(Low) 2.5197
    Number of Reflections(R-Free) 92
    Number of Reflections(R-Work) 1893
    R-Factor(R-Work) 0.2866
    R-Factor(R-Free) 0.3366
    Percent Reflections(Observed) 70.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5197
    Shell Resolution(Low) 2.5529
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.2866
    R-Factor(R-Free) 0.3515
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5529
    Shell Resolution(Low) 2.5878
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2663
    R-Factor(R-Work) 0.2887
    R-Factor(R-Free) 0.3747
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5878
    Shell Resolution(Low) 2.6248
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2698
    R-Factor(R-Work) 0.2698
    R-Factor(R-Free) 0.3217
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6248
    Shell Resolution(Low) 2.664
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2686
    R-Factor(R-Work) 0.2602
    R-Factor(R-Free) 0.3446
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.664
    Shell Resolution(Low) 2.7056
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2696
    R-Factor(R-Work) 0.25
    R-Factor(R-Free) 0.35
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7056
    Shell Resolution(Low) 2.75
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.2335
    R-Factor(R-Free) 0.3194
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.75
    Shell Resolution(Low) 2.7974
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2688
    R-Factor(R-Work) 0.229
    R-Factor(R-Free) 0.2889
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7974
    Shell Resolution(Low) 2.8482
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2687
    R-Factor(R-Work) 0.2324
    R-Factor(R-Free) 0.2425
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8482
    Shell Resolution(Low) 2.903
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 2665
    R-Factor(R-Work) 0.237
    R-Factor(R-Free) 0.3067
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.903
    Shell Resolution(Low) 2.9623
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2709
    R-Factor(R-Work) 0.2477
    R-Factor(R-Free) 0.3162
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9623
    Shell Resolution(Low) 3.0267
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2668
    R-Factor(R-Work) 0.2365
    R-Factor(R-Free) 0.2816
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0267
    Shell Resolution(Low) 3.097
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2730
    R-Factor(R-Work) 0.2155
    R-Factor(R-Free) 0.2911
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.097
    Shell Resolution(Low) 3.1745
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 2675
    R-Factor(R-Work) 0.2159
    R-Factor(R-Free) 0.2809
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1745
    Shell Resolution(Low) 3.2603
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2694
    R-Factor(R-Work) 0.2119
    R-Factor(R-Free) 0.2813
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2603
    Shell Resolution(Low) 3.3562
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2676
    R-Factor(R-Work) 0.2147
    R-Factor(R-Free) 0.2432
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3562
    Shell Resolution(Low) 3.4645
    Number of Reflections(R-Free) 163
    Number of Reflections(R-Work) 2645
    R-Factor(R-Work) 0.2074
    R-Factor(R-Free) 0.258
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4645
    Shell Resolution(Low) 3.5883
    Number of Reflections(R-Free) 161
    Number of Reflections(R-Work) 2658
    R-Factor(R-Work) 0.2034
    R-Factor(R-Free) 0.2416
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5883
    Shell Resolution(Low) 3.7319
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2696
    R-Factor(R-Work) 0.1986
    R-Factor(R-Free) 0.2418
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7319
    Shell Resolution(Low) 3.9016
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2708
    R-Factor(R-Work) 0.1939
    R-Factor(R-Free) 0.2529
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9016
    Shell Resolution(Low) 4.1072
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 2659
    R-Factor(R-Work) 0.1842
    R-Factor(R-Free) 0.2203
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1072
    Shell Resolution(Low) 4.3644
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2685
    R-Factor(R-Work) 0.1625
    R-Factor(R-Free) 0.1928
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3644
    Shell Resolution(Low) 4.7011
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2700
    R-Factor(R-Work) 0.1559
    R-Factor(R-Free) 0.2303
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7011
    Shell Resolution(Low) 5.1736
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2714
    R-Factor(R-Work) 0.174
    R-Factor(R-Free) 0.2154
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.1736
    Shell Resolution(Low) 5.9209
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2700
    R-Factor(R-Work) 0.184
    R-Factor(R-Free) 0.2048
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.9209
    Shell Resolution(Low) 7.4548
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2737
    R-Factor(R-Work) 0.2193
    R-Factor(R-Free) 0.2581
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 7.4548
    Shell Resolution(Low) 46.5124
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 2680
    R-Factor(R-Work) 0.2093
    R-Factor(R-Free) 0.2294
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.078
    f_dihedral_angle_d 15.188
    f_angle_d 1.165
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13078
    Nucleic Acid Atoms 0
    Heterogen Atoms 75
    Solvent Atoms 682
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Blu-Ice
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building MOLREP
    data collection Blu-Ice