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X-RAY DIFFRACTION
Materials and Methods page
4F4X
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 298.0
    Details 10% PEG-3350, 100 mM Ca(OAc)2, 100 mM MES/Tris, 2.5% Glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 101.12 α = 90
    b = 102.31 β = 90
    c = 52.88 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-10-07
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 1.1
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.04
    Resolution(Low) 30
    Percent Possible(Observed) 97.3
    R Merge I(Observed) 0.07
    Redundancy 4.9
     
    High Resolution Shell Details
    Resolution(High) 2.04
    Resolution(Low) 2.08
    Percent Possible(All) 80.9
    R Merge I(Observed) 0.333
    Mean I Over Sigma(Observed) 5.1
    Redundancy 2.2
    Number Unique Reflections(All) 1401
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.049
    Resolution(Low) 29.735
    Cut-off Sigma(F) 1.33
    Number of Reflections(Observed) 35101
    Number of Reflections(R-Free) 1760
    Percent Reflections(Observed) 99.66
    R-Factor(Observed) 0.2196
    R-Work 0.2181
    R-Free 0.2503
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 12.7286
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.7188
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -8.0098
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0495
    Shell Resolution(Low) 2.1049
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2467
    R-Factor(R-Work) 0.3713
    R-Factor(R-Free) 0.4169
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1049
    Shell Resolution(Low) 2.1668
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2509
    R-Factor(R-Work) 0.3643
    R-Factor(R-Free) 0.3878
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1668
    Shell Resolution(Low) 2.2367
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2523
    R-Factor(R-Work) 0.3481
    R-Factor(R-Free) 0.3572
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2367
    Shell Resolution(Low) 2.3166
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 2527
    R-Factor(R-Work) 0.339
    R-Factor(R-Free) 0.4182
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3166
    Shell Resolution(Low) 2.4093
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2557
    R-Factor(R-Work) 0.286
    R-Factor(R-Free) 0.3744
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4093
    Shell Resolution(Low) 2.5189
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.2716
    R-Factor(R-Free) 0.3352
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5189
    Shell Resolution(Low) 2.6516
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2538
    R-Factor(R-Work) 0.2426
    R-Factor(R-Free) 0.2747
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6516
    Shell Resolution(Low) 2.8177
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2557
    R-Factor(R-Work) 0.2271
    R-Factor(R-Free) 0.2639
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8177
    Shell Resolution(Low) 3.035
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2551
    R-Factor(R-Work) 0.2085
    R-Factor(R-Free) 0.2561
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.035
    Shell Resolution(Low) 3.3401
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2597
    R-Factor(R-Work) 0.202
    R-Factor(R-Free) 0.2273
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3401
    Shell Resolution(Low) 3.8225
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2587
    R-Factor(R-Work) 0.1918
    R-Factor(R-Free) 0.237
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8225
    Shell Resolution(Low) 4.8127
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.1717
    R-Factor(R-Free) 0.2088
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8127
    Shell Resolution(Low) 29.7385
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 2747
    R-Factor(R-Work) 0.1968
    R-Factor(R-Free) 0.188
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.006
    f_chiral_restr 0.072
    f_dihedral_angle_d 18.268
    f_angle_d 1.323
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2738
    Nucleic Acid Atoms 651
    Heterogen Atoms 32
    Solvent Atoms 186
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER in PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHASER version: in PHENIX
    data collection CBASS