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X-RAY DIFFRACTION
Materials and Methods page
4F4P
  •   Crystallization Hide
    Crystallization Experiments
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 39.5 α = 90
    b = 84.23 β = 90
    c = 89.82 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2008-07-25
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength List 1.000
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.37
    Resolution(Low) 38.12
    Number Reflections(Observed) 12709
    Percent Possible(Observed) 94.7
    R Merge I(Observed) 0.088
    Redundancy 5.1
     
    High Resolution Shell Details
    Resolution(High) 2.37
    Resolution(Low) 2.57
    Percent Possible(All) 94.5
    R Merge I(Observed) 0.788
    Redundancy 4.0
     
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 2.37
    Resolution(Low) 38.12
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 12074
    Number of Reflections(R-Free) 608
    Percent Reflections(Observed) 95.02
    R-Factor(Observed) 0.2409
    R-Work 0.2385
    R-Free 0.2846
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 63.765
    Anisotropic B[1][1] -0.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -4.23
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 4.27
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.37
    Shell Resolution(Low) 2.431
    Number of Reflections(R-Free) 39
    Number of Reflections(R-Work) 805
    R-Factor(R-Work) 0.335
    R-Factor(R-Free) 0.432
    Percent Reflections(Observed) 95.37
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.336
    r_nbd_refined 0.193
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.004
    r_chiral_restr 0.062
    r_dihedral_angle_4_deg 18.692
    r_dihedral_angle_3_deg 14.944
    r_dihedral_angle_2_deg 34.58
    r_dihedral_angle_1_deg 5.742
    r_angle_other_deg 0.72
    r_angle_refined_deg 1.045
    r_bond_other_d 0.001
    r_bond_refined_d 0.008
    r_nbd_other 0.176
    r_nbtor_refined 0.181
    r_nbtor_other 0.083
    r_xyhbond_nbd_refined 0.158
    r_xyhbond_nbd_other 0.029
    r_symmetry_vdw_refined 0.09
    r_symmetry_vdw_other 0.197
    r_symmetry_hbond_refined 0.138
    r_mcbond_it 1.626
    r_mcbond_other 0.335
    r_mcangle_it 2.066
    r_scbond_it 3.234
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2121
    Nucleic Acid Atoms 0
    Heterogen Atoms 34
    Solvent Atoms 21
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Refinement REFMAC 5.2.0005
     
    Software
    data extraction pdb_extract version: 3.11
    refinement REFMAC5 version: 5.2.0005