POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4F2U
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details 22% PEG 4000,0.100 M Hepes, 10% isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.22 α = 90
    b = 56.12 β = 90
    c = 61.71 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 120
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Details Osmic VariMax
    Collection Date 2011-08-15
     
    Diffraction Radiation
    Monochromator Osmic VariMax
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.19
    Resolution(Low) 50
    Number Reflections(All) 94114
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.117
    Redundancy 6.0
     
    High Resolution Shell Details
    Resolution(High) 2.19
    Resolution(Low) 2.24
    Percent Possible(All) 100.0
    Redundancy 6.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.19
    Resolution(Low) 30.854
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 16693
    Number of Reflections(Observed) 15898
    Number of Reflections(R-Free) 795
    Percent Reflections(Observed) 99.52
    R-Factor(Observed) 0.1618
    R-Work 0.158
    R-Free 0.2358
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -2.5575
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.3503
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 3.9077
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.19
    Shell Resolution(Low) 2.3275
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2424
    R-Factor(R-Work) 0.1695
    R-Factor(R-Free) 0.2538
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3275
    Shell Resolution(Low) 2.5071
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2472
    R-Factor(R-Work) 0.1709
    R-Factor(R-Free) 0.2729
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5071
    Shell Resolution(Low) 2.7593
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2491
    R-Factor(R-Work) 0.1655
    R-Factor(R-Free) 0.2692
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7593
    Shell Resolution(Low) 3.1582
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2505
    R-Factor(R-Work) 0.1712
    R-Factor(R-Free) 0.2524
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1582
    Shell Resolution(Low) 3.9777
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2539
    R-Factor(R-Work) 0.1573
    R-Factor(R-Free) 0.2111
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9777
    Shell Resolution(Low) 30.857
    Number of Reflections(R-Free) 119
    Number of Reflections(R-Work) 2672
    R-Factor(R-Work) 0.1454
    R-Factor(R-Free) 0.2211
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.007
    f_chiral_restr 0.109
    f_dihedral_angle_d 15.729
    f_angle_d 1.703
    f_bond_d 0.019
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2436
    Nucleic Acid Atoms 0
    Heterogen Atoms 35
    Solvent Atoms 288
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phaser)
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHENIX version: (phaser)
    data collection HKL-2000