POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4F2T
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.6
    Temperature 293.0
    Details 16% PEG 4000, 0.150 M ammonium acetate, 0.100 M sodium acetate, 0.100 M magnesium nitrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.09 α = 90
    b = 55.96 β = 90
    c = 61.68 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 120
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type RIGAKU RAXIS IV++
    Details Osmic VariMax
    Collection Date 2012-01-24
     
    Diffraction Radiation
    Monochromator Osmic VariMax
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.54
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2
    Resolution(Low) 50
    Number Reflections(All) 274181
    Percent Possible(Observed) 98.9
    R Merge I(Observed) 0.063
    Redundancy 12.3
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.03
    Percent Possible(All) 97.8
    Redundancy 12.3
    Number Unique Reflections(All) 997
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.3
    Resolution(Low) 29.855
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 14219
    Number of Reflections(Observed) 13541
    Number of Reflections(R-Free) 678
    Percent Reflections(Observed) 98.44
    R-Factor(Observed) 0.1898
    R-Work 0.1872
    R-Free 0.2408
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -13.4092
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 11.297
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 2.1122
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.4775
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2529
    R-Factor(R-Work) 0.2083
    R-Factor(R-Free) 0.2919
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4775
    Shell Resolution(Low) 2.7267
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2563
    R-Factor(R-Work) 0.2128
    R-Factor(R-Free) 0.2801
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7267
    Shell Resolution(Low) 3.1209
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2565
    R-Factor(R-Work) 0.2081
    R-Factor(R-Free) 0.2949
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1209
    Shell Resolution(Low) 3.9306
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 2545
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2669
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9306
    Shell Resolution(Low) 29.8574
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2661
    R-Factor(R-Work) 0.1635
    R-Factor(R-Free) 0.187
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.076
    f_dihedral_angle_d 14.934
    f_angle_d 1.086
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2405
    Nucleic Acid Atoms 0
    Heterogen Atoms 12
    Solvent Atoms 103
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX (phaser)
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building PHENIX version: (phaser)
    data collection HKL-2000