X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.8
Temperature 290.0
Details 47%-49% Saturated Ammonium Sulfate, 2.5% MPD, 10mM MnSO4, 100mM MES , pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.18 α = 90
b = 108.59 β = 90
c = 150.99 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2011-11-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-BM 1.0000 APS 22-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 50 98.2 0.109 -- -- 10.0 -- 180667 -- -3.0 29.445
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.65 1.75 89.1 0.509 -- 3.72 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.651 34.19 -- 2.35 -- 175745 7731 95.78 -- 0.1751 0.174 0.1994 Inherited free reflections from 4F2R
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.6511 1.6699 -- 120 2414 0.2834 0.2956 -- 42.0
X Ray Diffraction 1.6699 1.6895 -- 255 5243 0.2301 0.2588 -- 90.0
X Ray Diffraction 1.6895 1.7101 -- 260 5285 0.2208 0.2552 -- 92.0
X Ray Diffraction 1.7101 1.7318 -- 264 5348 0.2142 0.2316 -- 93.0
X Ray Diffraction 1.7318 1.7546 -- 268 5411 0.2141 0.2754 -- 94.0
X Ray Diffraction 1.7546 1.7786 -- 268 5449 0.2037 0.2243 -- 94.0
X Ray Diffraction 1.7786 1.804 -- 283 5493 0.1971 0.2233 -- 95.0
X Ray Diffraction 1.804 1.8309 -- 283 5485 0.2042 0.2304 -- 95.0
X Ray Diffraction 1.8309 1.8596 -- 276 5566 0.2002 0.2372 -- 96.0
X Ray Diffraction 1.8596 1.89 -- 285 5543 0.1893 0.2297 -- 96.0
X Ray Diffraction 1.89 1.9226 -- 291 5592 0.1835 0.2337 -- 97.0
X Ray Diffraction 1.9226 1.9576 -- 289 5668 0.1818 0.2156 -- 98.0
X Ray Diffraction 1.9576 1.9952 -- 199 5759 0.1757 0.1902 -- 98.0
X Ray Diffraction 1.9952 2.036 -- 207 5790 0.1735 0.2173 -- 99.0
X Ray Diffraction 2.036 2.0802 -- 210 5776 0.1718 0.1852 -- 99.0
X Ray Diffraction 2.0802 2.1286 -- 234 5818 0.1686 0.2093 -- 99.0
X Ray Diffraction 2.1286 2.1818 -- 223 5812 0.1644 0.1945 -- 99.0
X Ray Diffraction 2.1818 2.2408 -- 273 5771 0.1658 0.1947 -- 99.0
X Ray Diffraction 2.2408 2.3067 -- 213 5882 0.1589 0.2018 -- 100.0
X Ray Diffraction 2.3067 2.3812 -- 229 5821 0.1594 0.1912 -- 99.0
X Ray Diffraction 2.3812 2.4662 -- 245 5850 0.1635 0.1971 -- 100.0
X Ray Diffraction 2.4662 2.565 -- 232 5877 0.1662 0.1846 -- 100.0
X Ray Diffraction 2.565 2.6817 -- 252 5835 0.1743 0.1945 -- 100.0
X Ray Diffraction 2.6817 2.823 -- 258 5871 0.1812 0.2224 -- 100.0
X Ray Diffraction 2.823 2.9997 -- 287 5877 0.1861 0.2255 -- 100.0
X Ray Diffraction 2.9997 3.2312 -- 294 5855 0.1826 0.1961 -- 100.0
X Ray Diffraction 3.2312 3.5561 -- 306 5866 0.1662 0.1898 -- 100.0
X Ray Diffraction 3.5561 4.0699 -- 299 5933 0.1541 0.1683 -- 100.0
X Ray Diffraction 4.0699 5.1249 -- 312 5952 0.1464 0.1685 -- 100.0
X Ray Diffraction 5.1249 34.1972 -- 316 6172 0.1918 0.2018 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.094
f_angle_d 1.403
f_dihedral_angle_d 15.293
f_plane_restr 0.007
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9310
Nucleic Acid Atoms 832
Heterogen Atoms 110
Solvent Atoms 1323

Software

Software
Software Name Purpose
XSCALE data scaling
PHENIX refinement version: dev_1026
PDB_EXTRACT data extraction version: 3.11
XDS data reduction