X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.8
Temperature 290.0
Details 48%-53% Saturated Ammonium Sulfate, 2.5% MPD, 10mM MgSO4, 100mM MES, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.92 α = 90
b = 108.96 β = 90
c = 149.49 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2010-04-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 12.3.1 0.9795 ALS 12.3.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.64 50 91.2 0.042 -- -- 5.6 -- 171000 -- -3.0 28.337
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.64 1.74 99.9 0.496 -- 3.85 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.64 43.125 -- 2.35 -- 161679 7358 86.23 -- 0.1691 0.168 0.1909 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.64 1.6586 -- 269 5124 0.2138 0.2329 -- 86.0
X Ray Diffraction 1.6586 1.6782 -- 271 5144 0.2101 0.2591 -- 88.0
X Ray Diffraction 1.6782 1.6986 -- 274 5200 0.2031 0.244 -- 89.0
X Ray Diffraction 1.6986 1.7201 -- 277 5270 0.1992 0.2502 -- 90.0
X Ray Diffraction 1.7201 1.7428 -- 282 5349 0.1897 0.235 -- 91.0
X Ray Diffraction 1.7428 1.7666 -- 279 5300 0.1829 0.2106 -- 91.0
X Ray Diffraction 1.7666 1.7919 -- 284 5394 0.178 0.2206 -- 92.0
X Ray Diffraction 1.7919 1.8186 -- 286 5449 0.1761 0.216 -- 92.0
X Ray Diffraction 1.8186 1.847 -- 285 5415 0.1767 0.2061 -- 92.0
X Ray Diffraction 1.847 1.8773 -- 276 5241 0.1727 0.2233 -- 89.0
X Ray Diffraction 1.8773 1.9097 -- 115 2181 0.178 0.2301 -- 77.0
X Ray Diffraction 1.9097 1.9444 -- 1 8 0.1339 0.1035 -- 19.0
X Ray Diffraction 1.9444 1.9818 -- 263 5003 0.1812 0.2226 -- 85.0
X Ray Diffraction 1.9818 2.0223 -- 219 5762 0.1705 0.1902 -- 96.0
X Ray Diffraction 2.0223 2.0662 -- 211 5796 0.1638 0.1843 -- 97.0
X Ray Diffraction 2.0662 2.1143 -- 233 5854 0.1623 0.1877 -- 98.0
X Ray Diffraction 2.1143 2.1672 -- 228 5829 0.1618 0.1881 -- 98.0
X Ray Diffraction 2.1672 2.2258 -- 262 5270 0.1688 0.2104 -- 89.0
X Ray Diffraction 2.2258 2.2913 -- 39 1107 0.1737 0.2276 -- 81.0
X Ray Diffraction 2.2913 2.3652 -- 224 5775 0.1565 0.1833 -- 96.0
X Ray Diffraction 2.3652 2.4497 -- 234 5877 0.1573 0.1935 -- 98.0
X Ray Diffraction 2.4497 2.5478 -- 245 5886 0.1572 0.1683 -- 98.0
X Ray Diffraction 2.5478 2.6637 -- 251 5896 0.1633 0.1732 -- 98.0
X Ray Diffraction 2.6637 2.8042 -- 256 5880 0.1707 0.1835 -- 98.0
X Ray Diffraction 2.8042 2.9798 -- 278 5873 0.1698 0.1978 -- 98.0
X Ray Diffraction 2.9798 3.2098 -- 292 5943 0.1721 0.1906 -- 99.0
X Ray Diffraction 3.2098 3.5327 -- 312 5875 0.1611 0.1731 -- 98.0
X Ray Diffraction 3.5327 4.0436 -- 299 5855 0.1645 0.1866 -- 97.0
X Ray Diffraction 4.0436 5.0932 -- 309 5944 0.139 0.1627 -- 98.0
X Ray Diffraction 5.0932 43.1402 -- 304 5821 0.1961 0.1964 -- 92.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.077
f_bond_d 0.01
f_angle_d 1.348
f_plane_restr 0.007
f_dihedral_angle_d 15.327
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9280
Nucleic Acid Atoms 828
Heterogen Atoms 46
Solvent Atoms 1363

Software

Software
Software Name Purpose
XSCALE data scaling
PHENIX refinement version: dev_1026
PDB_EXTRACT data extraction version: 3.11
XDS data reduction