X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 148.14 α = 90
b = 148.14 β = 90
c = 192.07 γ = 90
Symmetry
Space Group P 42 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2006-11-24
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 0.97200 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.88 45.98 99.3 0.096 0.096 -- 7.2 -- 170100 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.88 1.98 95.9 0.739 0.739 2.59 4.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.885 45.983 -- 1.36 -- 170055 8492 99.27 -- 0.1739 0.1727 0.1972 random
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.885 1.9065 -- 245 4773 0.2674 0.2857 -- 89.0
X Ray Diffraction 1.9065 1.9289 -- 263 5193 0.2363 0.2799 -- 97.0
X Ray Diffraction 1.9289 1.9524 -- 283 5265 0.2282 0.2676 -- 98.0
X Ray Diffraction 1.9524 1.9771 -- 298 5344 0.2189 0.2577 -- 100.0
X Ray Diffraction 1.9771 2.0032 -- 252 5385 0.2127 0.2499 -- 100.0
X Ray Diffraction 2.0032 2.0306 -- 269 5374 0.2031 0.2571 -- 100.0
X Ray Diffraction 2.0306 2.0596 -- 311 5330 0.1953 0.2501 -- 100.0
X Ray Diffraction 2.0596 2.0904 -- 278 5382 0.1848 0.2243 -- 100.0
X Ray Diffraction 2.0904 2.123 -- 274 5362 0.1837 0.2193 -- 100.0
X Ray Diffraction 2.123 2.1578 -- 290 5338 0.1845 0.2256 -- 100.0
X Ray Diffraction 2.1578 2.195 -- 309 5331 0.1789 0.206 -- 100.0
X Ray Diffraction 2.195 2.2349 -- 295 5397 0.1784 0.2331 -- 100.0
X Ray Diffraction 2.2349 2.2779 -- 291 5376 0.1826 0.216 -- 100.0
X Ray Diffraction 2.2779 2.3244 -- 273 5364 0.1827 0.2207 -- 100.0
X Ray Diffraction 2.3244 2.375 -- 255 5435 0.1801 0.1985 -- 100.0
X Ray Diffraction 2.375 2.4302 -- 279 5398 0.177 0.2111 -- 100.0
X Ray Diffraction 2.4302 2.491 -- 281 5393 0.1826 0.2092 -- 100.0
X Ray Diffraction 2.491 2.5583 -- 277 5433 0.1749 0.2266 -- 100.0
X Ray Diffraction 2.5583 2.6336 -- 302 5376 0.1755 0.2041 -- 100.0
X Ray Diffraction 2.6336 2.7186 -- 263 5424 0.1692 0.1939 -- 100.0
X Ray Diffraction 2.7186 2.8157 -- 258 5438 0.1738 0.1913 -- 100.0
X Ray Diffraction 2.8157 2.9285 -- 269 5440 0.1759 0.2019 -- 100.0
X Ray Diffraction 2.9285 3.0617 -- 309 5414 0.1807 0.2129 -- 100.0
X Ray Diffraction 3.0617 3.2231 -- 297 5464 0.1746 0.2016 -- 100.0
X Ray Diffraction 3.2231 3.425 -- 287 5456 0.1661 0.1728 -- 100.0
X Ray Diffraction 3.425 3.6893 -- 290 5468 0.1539 0.1822 -- 100.0
X Ray Diffraction 3.6893 4.0604 -- 303 5473 0.1437 0.1526 -- 100.0
X Ray Diffraction 4.0604 4.6474 -- 286 5549 0.143 0.1717 -- 100.0
X Ray Diffraction 4.6474 5.8534 -- 309 5560 0.152 0.1643 -- 100.0
X Ray Diffraction 5.8534 45.983 -- 296 5628 0.1862 0.1819 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.075
f_dihedral_angle_d 13.674
f_angle_d 1.033
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10031
Nucleic Acid Atoms 0
Heterogen Atoms 94
Solvent Atoms 1189

Software

Computing
Computing Package Purpose
beamline software Data Collection
DENZO Data Reduction (intensity integration)
SADABS Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: dev_1032) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: dev_1032) refinement
PHASER model building
beamline version: software data collection