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X-RAY DIFFRACTION
Materials and Methods page
4EYH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 291.15
    Details 15% PEG 5000MME, 0.2 M MH4SO4, 0.1 M MES pH 6.5, 2.5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 98.05 α = 90
    b = 98.05 β = 90
    c = 194.65 γ = 120
     
    Space Group
    Space Group Name:    P 65 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2010-08-30
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 24-ID-E
    Wavelength List 0.97918
    Site APS
    Beamline 24-ID-E
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 1.0
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 2.9
    Resolution(Low) 32.09
    Number Reflections(All) 13253
    Number Reflections(Observed) 12590
    Percent Possible(Observed) 97.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 32.093
    Cut-off Sigma(F) 1.34
    Number of Reflections(all) 13253
    Number of Reflections(Observed) 12590
    Number of Reflections(R-Free) 1007
    Percent Reflections(Observed) 97.54
    R-Factor(All) 0.2452
    R-Factor(Observed) 0.2419
    R-Work 0.2386
    R-Free 0.2809
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 0.3943
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.3943
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.7886
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9
    Shell Resolution(Low) 3.053
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 1610
    R-Factor(R-Work) 0.3389
    R-Factor(R-Free) 0.389
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.053
    Shell Resolution(Low) 3.2442
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 1629
    R-Factor(R-Work) 0.3039
    R-Factor(R-Free) 0.3335
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2442
    Shell Resolution(Low) 3.4944
    Number of Reflections(R-Free) 155
    Number of Reflections(R-Work) 1621
    R-Factor(R-Work) 0.2726
    R-Factor(R-Free) 0.334
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4944
    Shell Resolution(Low) 3.8455
    Number of Reflections(R-Free) 129
    Number of Reflections(R-Work) 1640
    R-Factor(R-Work) 0.258
    R-Factor(R-Free) 0.3296
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8455
    Shell Resolution(Low) 4.4007
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 1643
    R-Factor(R-Work) 0.2229
    R-Factor(R-Free) 0.229
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.4007
    Shell Resolution(Low) 5.5398
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 1677
    R-Factor(R-Work) 0.2088
    R-Factor(R-Free) 0.2539
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.5398
    Shell Resolution(Low) 32.095
    Number of Reflections(R-Free) 153
    Number of Reflections(R-Work) 1763
    R-Factor(R-Work) 0.2196
    R-Factor(R-Free) 0.2585
    Percent Reflections(Observed) 95.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.003
    f_chiral_restr 0.06
    f_dihedral_angle_d 19.129
    f_angle_d 1.117
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2848
    Nucleic Acid Atoms 326
    Heterogen Atoms 31
    Solvent Atoms 28
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phaser
    Structure Refinement PHENIX (phenix.refine: 1.6.4_486)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.6.4_486)
    model building Phaser
    data collection ADSC version: Quantum