X-RAY DIFFRACTION Experimental Data & Validation

X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 9
Temperature 298.0
Details 0.1 M Bis-Tris propane pH 9.0, 10% PEG 200, 18% PEG 8,000, VAPOR DIFFUSION, SITTING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 80.14 α = 69.82
b = 85.03 β = 71.37
c = 96.92 γ = 85.66
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 298
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2010-03-10
Diffraction Radiation
Monochromator Protocol
Double crystal, Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.2 0.9774 ALS 8.2.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 49.8 96.1 -- -- -- -- -- n/a 2.0 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.198 49.797 -- 1.96 111229 111229 5572 96.1 0.1689 0.1709 0.1689 0.2098 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.198 2.2231 -- 145 2695 0.2284 0.2703 -- 73.0
X Ray Diffraction 2.2231 2.2493 -- 180 3154 0.2357 0.2628 -- 87.0
X Ray Diffraction 2.2493 2.2767 -- 173 3227 0.2409 0.3051 -- 89.0
X Ray Diffraction 2.2767 2.3055 -- 191 3351 0.2334 0.2853 -- 91.0
X Ray Diffraction 2.3055 2.3359 -- 192 3358 0.2118 0.2866 -- 93.0
X Ray Diffraction 2.3359 2.3679 -- 193 3499 0.2172 0.2609 -- 94.0
X Ray Diffraction 2.3679 2.4017 -- 172 3434 0.2217 0.2435 -- 96.0
X Ray Diffraction 2.4017 2.4376 -- 183 3564 0.2141 0.2748 -- 96.0
X Ray Diffraction 2.4376 2.4756 -- 191 3518 0.2368 0.2915 -- 97.0
X Ray Diffraction 2.4756 2.5162 -- 178 3584 0.2295 0.2965 -- 97.0
X Ray Diffraction 2.5162 2.5596 -- 186 3554 0.2061 0.2468 -- 97.0
X Ray Diffraction 2.5596 2.6062 -- 204 3582 0.2062 0.2541 -- 97.0
X Ray Diffraction 2.6062 2.6563 -- 208 3509 0.1936 0.2652 -- 98.0
X Ray Diffraction 2.6563 2.7105 -- 164 3611 0.1951 0.277 -- 98.0
X Ray Diffraction 2.7105 2.7694 -- 182 3603 0.1835 0.2229 -- 98.0
X Ray Diffraction 2.7694 2.8338 -- 177 3646 0.1745 0.2261 -- 98.0
X Ray Diffraction 2.8338 2.9047 -- 169 3628 0.1701 0.2009 -- 98.0
X Ray Diffraction 2.9047 2.9832 -- 177 3624 0.1786 0.2337 -- 98.0
X Ray Diffraction 2.9832 3.071 -- 193 3596 0.1711 0.2105 -- 99.0
X Ray Diffraction 3.071 3.1701 -- 188 3611 0.1675 0.2018 -- 99.0
X Ray Diffraction 3.1701 3.2834 -- 182 3625 0.1738 0.2276 -- 99.0
X Ray Diffraction 3.2834 3.4148 -- 202 3592 0.161 0.2116 -- 99.0
X Ray Diffraction 3.4148 3.5702 -- 217 3600 0.1615 0.2067 -- 99.0
X Ray Diffraction 3.5702 3.7584 -- 197 3611 0.161 0.185 -- 99.0
X Ray Diffraction 3.7584 3.9937 -- 195 3658 0.1363 0.1778 -- 99.0
X Ray Diffraction 3.9937 4.3019 -- 175 3648 0.1234 0.149 -- 99.0
X Ray Diffraction 4.3019 4.7346 -- 206 3630 0.1156 0.1555 -- 99.0
X Ray Diffraction 4.7346 5.4189 -- 186 3632 0.1332 0.1605 -- 99.0
X Ray Diffraction 5.4189 6.8245 -- 181 3660 0.1628 0.1853 -- 100.0
X Ray Diffraction 6.8245 49.8096 -- 185 3653 0.1575 0.1774 -- 99.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.3381
Anisotropic B[1][2] 6.7032
Anisotropic B[1][3] -0.7289
Anisotropic B[2][2] -3.0285
Anisotropic B[2][3] -4.5501
Anisotropic B[3][3] 3.3666
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.07
f_chiral_restr 0.07
f_angle_d 1.071
f_plane_restr 0.005
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 15456
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 877

Software

Software
Software Name Purpose
BOS data collection
PHENIX model building
PHENIX refinement version: (phenix.refine: dev_718)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing