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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4EWP
Crystal structure of FabH from Micrococcus luteus
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
Biological Assembly 3 (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Sitting Drop
pH
9
Temperature
298.0
Details
0.1 M Bis-Tris propane pH 9.0, 10% PEG 200, 18% PEG 8,000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 80.14
α = 69.82
b = 85.03
β = 71.37
c = 96.92
γ = 85.66
Symmetry
Space Group
P 1
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
298
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM 315r
--
2010-03-10
Diffraction Radiation
Monochromator
Protocol
Double crystal, Si(111)
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
ALS BEAMLINE 8.2.2
0.9774
ALS
8.2.2
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
2.2
49.8
96.1
--
--
--
--
--
n/a
2.0
2.0
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
2.198
49.797
--
1.96
111229
111229
5572
96.1
0.1689
0.1709
0.1689
0.2098
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
2.198
2.2231
--
145
2695
0.2284
0.2703
--
73.0
X Ray Diffraction
2.2231
2.2493
--
180
3154
0.2357
0.2628
--
87.0
X Ray Diffraction
2.2493
2.2767
--
173
3227
0.2409
0.3051
--
89.0
X Ray Diffraction
2.2767
2.3055
--
191
3351
0.2334
0.2853
--
91.0
X Ray Diffraction
2.3055
2.3359
--
192
3358
0.2118
0.2866
--
93.0
X Ray Diffraction
2.3359
2.3679
--
193
3499
0.2172
0.2609
--
94.0
X Ray Diffraction
2.3679
2.4017
--
172
3434
0.2217
0.2435
--
96.0
X Ray Diffraction
2.4017
2.4376
--
183
3564
0.2141
0.2748
--
96.0
X Ray Diffraction
2.4376
2.4756
--
191
3518
0.2368
0.2915
--
97.0
X Ray Diffraction
2.4756
2.5162
--
178
3584
0.2295
0.2965
--
97.0
X Ray Diffraction
2.5162
2.5596
--
186
3554
0.2061
0.2468
--
97.0
X Ray Diffraction
2.5596
2.6062
--
204
3582
0.2062
0.2541
--
97.0
X Ray Diffraction
2.6062
2.6563
--
208
3509
0.1936
0.2652
--
98.0
X Ray Diffraction
2.6563
2.7105
--
164
3611
0.1951
0.277
--
98.0
X Ray Diffraction
2.7105
2.7694
--
182
3603
0.1835
0.2229
--
98.0
X Ray Diffraction
2.7694
2.8338
--
177
3646
0.1745
0.2261
--
98.0
X Ray Diffraction
2.8338
2.9047
--
169
3628
0.1701
0.2009
--
98.0
X Ray Diffraction
2.9047
2.9832
--
177
3624
0.1786
0.2337
--
98.0
X Ray Diffraction
2.9832
3.071
--
193
3596
0.1711
0.2105
--
99.0
X Ray Diffraction
3.071
3.1701
--
188
3611
0.1675
0.2018
--
99.0
X Ray Diffraction
3.1701
3.2834
--
182
3625
0.1738
0.2276
--
99.0
X Ray Diffraction
3.2834
3.4148
--
202
3592
0.161
0.2116
--
99.0
X Ray Diffraction
3.4148
3.5702
--
217
3600
0.1615
0.2067
--
99.0
X Ray Diffraction
3.5702
3.7584
--
197
3611
0.161
0.185
--
99.0
X Ray Diffraction
3.7584
3.9937
--
195
3658
0.1363
0.1778
--
99.0
X Ray Diffraction
3.9937
4.3019
--
175
3648
0.1234
0.149
--
99.0
X Ray Diffraction
4.3019
4.7346
--
206
3630
0.1156
0.1555
--
99.0
X Ray Diffraction
4.7346
5.4189
--
186
3632
0.1332
0.1605
--
99.0
X Ray Diffraction
5.4189
6.8245
--
181
3660
0.1628
0.1853
--
100.0
X Ray Diffraction
6.8245
49.8096
--
185
3653
0.1575
0.1774
--
99.0
Temperature Factor Modeling
Temperature Factor
Value
Anisotropic B[1][1]
-0.3381
Anisotropic B[1][2]
6.7032
Anisotropic B[1][3]
-0.7289
Anisotropic B[2][2]
-3.0285
Anisotropic B[2][3]
-4.5501
Anisotropic B[3][3]
3.3666
RMS Deviations
Key
Refinement Restraint Deviation
f_angle_d
1.071
f_dihedral_angle_d
14.07
f_bond_d
0.007
f_plane_restr
0.005
f_chiral_restr
0.07
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
15456
Nucleic Acid Atoms
0
Heterogen Atoms
0
Solvent Atoms
877
Software
Software
Software Name
Purpose
BOS
data collection
PHENIX
model building
PHENIX
refinement version: (phenix.refine: dev_718)
HKL-2000
data reduction
HKL-2000
data scaling
PHENIX
phasing