X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 57.65 α = 90
b = 112.52 β = 90
c = 163.4 γ = 90
Symmetry
Space Group F 2 2 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 210 -- --
Diffraction Radiation
Monochromator Protocol
Diamond(001) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 0.976 ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 81.7 95.7 -- -- -- -- 21106 20607 2.0 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.903 46.336 -- 1.99 20802 20574 1027 97.49 -- 0.2055 0.2038 0.2365 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.903 2.0028 -- 130 2473 0.5304 0.5406 -- 88.0
X Ray Diffraction 2.0028 2.1283 -- 147 2795 0.3668 0.3655 -- 98.0
X Ray Diffraction 2.1283 2.2926 -- 142 2745 0.2654 0.344 -- 96.0
X Ray Diffraction 2.2926 2.5233 -- 150 2833 0.227 0.288 -- 100.0
X Ray Diffraction 2.5233 2.8884 -- 151 2869 0.2187 0.2802 -- 100.0
X Ray Diffraction 2.8884 3.6389 -- 150 2864 0.1868 0.2399 -- 100.0
X Ray Diffraction 3.6389 46.3495 -- 157 2968 0.1577 0.1673 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 1.608
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.1322
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.4758
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.003
f_chiral_restr 0.071
f_dihedral_angle_d 14.642
f_angle_d 1.079
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1872
Nucleic Acid Atoms 0
Heterogen Atoms 23
Solvent Atoms 66

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.7.2_869) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.2_869) refinement