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X-RAY DIFFRACTION
Materials and Methods page
4EUD
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.2
    Temperature 298.0
    Details 0.9 M sodium citrate, 0.1 M imidazole, 25 mM 2-mercaptoethanol, and 2 mM CoA, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.65 α = 90
    b = 110.6 β = 90
    c = 119.92 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2010-07-02
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 23-ID-B
    Wavelength List 1.0332
    Site APS
    Beamline 23-ID-B
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.94
    Resolution(Low) 50
    Number Reflections(All) 64164
    Number Reflections(Observed) 64164
    Percent Possible(Observed) 97.3
    R Merge I(Observed) 0.214
    Redundancy 9.4
     
    High Resolution Shell Details
    Resolution(High) 1.94
    Resolution(Low) 2.01
    Percent Possible(All) 94.8
    R Merge I(Observed) 0.6
    Mean I Over Sigma(Observed) 3.9
    R-Sym I(Observed) 0.6
    Redundancy 6.5
    Number Unique Reflections(All) 6136
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.95
    Resolution(Low) 42.815
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 60824
    Number of Reflections(R-Free) 3021
    Percent Reflections(Observed) 91.7
    R-Factor(Observed) 0.1609
    R-Work 0.1585
    R-Free 0.2059
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.5496
    Anisotropic B[1][1] -2.0166
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 4.9185
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -2.9019
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9498
    Shell Resolution(Low) 2.0195
    Number of Reflections(Observed) 5207
    Number of Reflections(R-Free) 254
    Number of Reflections(R-Work) 4953
    R-Factor(R-Work) 0.1776
    R-Factor(R-Free) 0.2601
    Percent Reflections(Observed) 79.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0195
    Shell Resolution(Low) 2.1004
    Number of Reflections(Observed) 5753
    Number of Reflections(R-Free) 285
    Number of Reflections(R-Work) 5468
    R-Factor(R-Work) 0.1743
    R-Factor(R-Free) 0.2502
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1004
    Shell Resolution(Low) 2.196
    Number of Reflections(Observed) 5836
    Number of Reflections(R-Free) 291
    Number of Reflections(R-Work) 5545
    R-Factor(R-Work) 0.168
    R-Factor(R-Free) 0.2253
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.196
    Shell Resolution(Low) 2.3117
    Number of Reflections(Observed) 5906
    Number of Reflections(R-Free) 308
    Number of Reflections(R-Work) 5598
    R-Factor(R-Work) 0.1666
    R-Factor(R-Free) 0.2276
    Percent Reflections(Observed) 90.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3117
    Shell Resolution(Low) 2.4566
    Number of Reflections(Observed) 6028
    Number of Reflections(R-Free) 286
    Number of Reflections(R-Work) 5742
    R-Factor(R-Work) 0.1617
    R-Factor(R-Free) 0.2169
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4566
    Shell Resolution(Low) 2.6462
    Number of Reflections(Observed) 6098
    Number of Reflections(R-Free) 308
    Number of Reflections(R-Work) 5790
    R-Factor(R-Work) 0.1618
    R-Factor(R-Free) 0.2158
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6462
    Shell Resolution(Low) 2.9125
    Number of Reflections(Observed) 6180
    Number of Reflections(R-Free) 303
    Number of Reflections(R-Work) 5877
    R-Factor(R-Work) 0.1682
    R-Factor(R-Free) 0.2096
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9125
    Shell Resolution(Low) 3.3338
    Number of Reflections(Observed) 6375
    Number of Reflections(R-Free) 323
    Number of Reflections(R-Work) 6052
    R-Factor(R-Work) 0.1665
    R-Factor(R-Free) 0.2111
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3338
    Shell Resolution(Low) 4.1996
    Number of Reflections(Observed) 6618
    Number of Reflections(R-Free) 326
    Number of Reflections(R-Work) 6292
    R-Factor(R-Work) 0.1431
    R-Factor(R-Free) 0.172
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1996
    Shell Resolution(Low) 42.8255
    Number of Reflections(Observed) 6823
    Number of Reflections(R-Free) 337
    Number of Reflections(R-Work) 6486
    R-Factor(R-Work) 0.147
    R-Factor(R-Free) 0.1872
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 15.099
    f_plane_restr 0.005
    f_chiral_restr 0.072
    f_angle_d 1.034
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7686
    Nucleic Acid Atoms 0
    Heterogen Atoms 113
    Solvent Atoms 745
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.6.3_473)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL