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X-RAY DIFFRACTION
Materials and Methods page
4EUC
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.2
    Temperature 298.0
    Details 0.9 M sodium citrate, 0.1 M imidazole, 25 mM 2-mercaptoethanol, and 10 mM dethiaacetyl-CoA, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.49 α = 90
    b = 104.05 β = 90
    c = 120.13 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2011-12-06
     
    Diffraction Radiation
    Monochromator C(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Wavelength List 0.97856
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.64
    Resolution(Low) 50
    Number Reflections(All) 29835
    Number Reflections(Observed) 29835
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.14
    Redundancy 14.7
     
    High Resolution Shell Details
    Resolution(High) 2.65
    Resolution(Low) 2.7
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.754
    Mean I Over Sigma(Observed) 6.2
    R-Sym I(Observed) 0.754
    Redundancy 14.9
    Number Unique Reflections(All) 1441
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.644
    Resolution(Low) 43.531
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 29775
    Number of Reflections(R-Free) 1489
    Percent Reflections(Observed) 99.93
    R-Factor(Observed) 0.1709
    R-Work 0.1679
    R-Free 0.2256
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 46.5757
    Anisotropic B[1][1] 6.008
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 7.7252
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -13.7332
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6443
    Shell Resolution(Low) 2.7296
    Number of Reflections(Observed) 2663
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2530
    R-Factor(R-Work) 0.2221
    R-Factor(R-Free) 0.2966
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7296
    Shell Resolution(Low) 2.8271
    Number of Reflections(Observed) 2642
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2510
    R-Factor(R-Work) 0.2134
    R-Factor(R-Free) 0.275
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8271
    Shell Resolution(Low) 2.9403
    Number of Reflections(Observed) 2681
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2547
    R-Factor(R-Work) 0.2013
    R-Factor(R-Free) 0.3017
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9403
    Shell Resolution(Low) 3.0741
    Number of Reflections(Observed) 2671
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2538
    R-Factor(R-Work) 0.1959
    R-Factor(R-Free) 0.2596
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0741
    Shell Resolution(Low) 3.2361
    Number of Reflections(Observed) 2664
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2530
    R-Factor(R-Work) 0.1878
    R-Factor(R-Free) 0.2799
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2361
    Shell Resolution(Low) 3.4388
    Number of Reflections(Observed) 2698
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2564
    R-Factor(R-Work) 0.1848
    R-Factor(R-Free) 0.2589
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4388
    Shell Resolution(Low) 3.7042
    Number of Reflections(Observed) 2681
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2546
    R-Factor(R-Work) 0.1769
    R-Factor(R-Free) 0.2386
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7042
    Shell Resolution(Low) 4.0767
    Number of Reflections(Observed) 2716
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2581
    R-Factor(R-Work) 0.1562
    R-Factor(R-Free) 0.2164
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0767
    Shell Resolution(Low) 4.666
    Number of Reflections(Observed) 2731
    Number of Reflections(R-Free) 137
    Number of Reflections(R-Work) 2594
    R-Factor(R-Work) 0.1368
    R-Factor(R-Free) 0.171
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.666
    Shell Resolution(Low) 5.8764
    Number of Reflections(Observed) 2752
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2614
    R-Factor(R-Work) 0.1531
    R-Factor(R-Free) 0.1977
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.8764
    Shell Resolution(Low) 43.5371
    Number of Reflections(Observed) 2876
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2732
    R-Factor(R-Work) 0.1515
    R-Factor(R-Free) 0.1974
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.187
    f_plane_restr 0.005
    f_chiral_restr 0.071
    f_angle_d 1.066
    f_bond_d 0.009
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7676
    Nucleic Acid Atoms 0
    Heterogen Atoms 106
    Solvent Atoms 205
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL