POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
4EU7
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8
    Temperature 298.0
    Details 1 M sodium citrate, 0.1 M imidazole, 25 mM 2-mercaptoethanol, and 2 mM CoA, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.42 α = 90
    b = 110.85 β = 90
    c = 120.37 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2009-12-06
     
    Diffraction Radiation
    Monochromator C(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Wavelength List 0.97856
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(All) 99312
    Number Reflections(Observed) 99312
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.105
    Redundancy 13.3
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.73
    Percent Possible(All) 97.6
    R Merge I(Observed) 0.542
    Mean I Over Sigma(Observed) 2.9
    R-Sym I(Observed) 0.542
    Redundancy 8.4
    Number Unique Reflections(All) 4801
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 28.8
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 95944
    Number of Reflections(R-Free) 4802
    Percent Reflections(Observed) 96.26
    R-Factor(Observed) 0.1577
    R-Work 0.1557
    R-Free 0.1939
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 18.7524
    Anisotropic B[1][1] -0.0306
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.7377
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -3.7071
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7004
    Shell Resolution(Low) 1.7612
    Number of Reflections(Observed) 8489
    Number of Reflections(R-Free) 443
    Number of Reflections(R-Work) 8046
    R-Factor(R-Work) 0.2231
    R-Factor(R-Free) 0.2674
    Percent Reflections(Observed) 86.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7612
    Shell Resolution(Low) 1.8317
    Number of Reflections(Observed) 9083
    Number of Reflections(R-Free) 438
    Number of Reflections(R-Work) 8645
    R-Factor(R-Work) 0.1921
    R-Factor(R-Free) 0.2596
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8317
    Shell Resolution(Low) 1.915
    Number of Reflections(Observed) 9339
    Number of Reflections(R-Free) 472
    Number of Reflections(R-Work) 8867
    R-Factor(R-Work) 0.1638
    R-Factor(R-Free) 0.2172
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.915
    Shell Resolution(Low) 2.0159
    Number of Reflections(Observed) 9466
    Number of Reflections(R-Free) 474
    Number of Reflections(R-Work) 8992
    R-Factor(R-Work) 0.1584
    R-Factor(R-Free) 0.2224
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0159
    Shell Resolution(Low) 2.1422
    Number of Reflections(Observed) 9650
    Number of Reflections(R-Free) 477
    Number of Reflections(R-Work) 9173
    R-Factor(R-Work) 0.1501
    R-Factor(R-Free) 0.1953
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1422
    Shell Resolution(Low) 2.3075
    Number of Reflections(Observed) 9745
    Number of Reflections(R-Free) 506
    Number of Reflections(R-Work) 9239
    R-Factor(R-Work) 0.1527
    R-Factor(R-Free) 0.2002
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3075
    Shell Resolution(Low) 2.5396
    Number of Reflections(Observed) 9813
    Number of Reflections(R-Free) 481
    Number of Reflections(R-Work) 9332
    R-Factor(R-Work) 0.1492
    R-Factor(R-Free) 0.1812
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5396
    Shell Resolution(Low) 2.9068
    Number of Reflections(Observed) 9939
    Number of Reflections(R-Free) 490
    Number of Reflections(R-Work) 9449
    R-Factor(R-Work) 0.1599
    R-Factor(R-Free) 0.2067
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9068
    Shell Resolution(Low) 3.6611
    Number of Reflections(Observed) 10041
    Number of Reflections(R-Free) 506
    Number of Reflections(R-Work) 9535
    R-Factor(R-Work) 0.1488
    R-Factor(R-Free) 0.1682
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6611
    Shell Resolution(Low) 28.8038
    Number of Reflections(Observed) 10379
    Number of Reflections(R-Free) 515
    Number of Reflections(R-Work) 9864
    R-Factor(R-Work) 0.1453
    R-Factor(R-Free) 0.1738
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 14.924
    f_plane_restr 0.005
    f_chiral_restr 0.071
    f_angle_d 1.044
    f_bond_d 0.006
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7768
    Nucleic Acid Atoms 0
    Heterogen Atoms 126
    Solvent Atoms 1236
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.6.3_473)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL