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X-RAY DIFFRACTION
Materials and Methods page
4EU4
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 298.0
    Details 2 M ammonium sulfate, 0.1 M sodium cacodylate, 0.2 M sodium chloride, 25 mM 2-mercaptoethanol, and 2 mM CoA, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 150.18 α = 90
    b = 150.18 β = 90
    c = 290.39 γ = 120
     
    Space Group
    Space Group Name:    P 62 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2009-10-09
     
    Diffraction Radiation
    Monochromator C(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Wavelength List 0.97856
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 2.8
    Resolution(Low) 50
    Number Reflections(All) 46836
    Number Reflections(Observed) 46836
    Percent Possible(Observed) 97.1
    R Merge I(Observed) 0.114
    Redundancy 18.0
     
    High Resolution Shell Details
    Resolution(High) 2.8
    Resolution(Low) 2.85
    Percent Possible(All) 92.2
    R Merge I(Observed) 0.718
    Mean I Over Sigma(Observed) 3.9
    R-Sym I(Observed) 0.718
    Redundancy 12.5
    Number Unique Reflections(All) 2173
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.802
    Resolution(Low) 41.541
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 44896
    Number of Reflections(R-Free) 2273
    Percent Reflections(Observed) 92.99
    R-Factor(Observed) 0.1801
    R-Work 0.1779
    R-Free 0.2231
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 49.7383
    Anisotropic B[1][1] 2.1712
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.1712
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -4.3423
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.802
    Shell Resolution(Low) 2.9021
    Number of Reflections(Observed) 3823
    Number of Reflections(R-Free) 201
    Number of Reflections(R-Work) 3622
    R-Factor(R-Work) 0.2866
    R-Factor(R-Free) 0.3592
    Percent Reflections(Observed) 81.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9021
    Shell Resolution(Low) 3.0183
    Number of Reflections(Observed) 4145
    Number of Reflections(R-Free) 214
    Number of Reflections(R-Work) 3931
    R-Factor(R-Work) 0.2512
    R-Factor(R-Free) 0.3135
    Percent Reflections(Observed) 87.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0183
    Shell Resolution(Low) 3.1556
    Number of Reflections(Observed) 4234
    Number of Reflections(R-Free) 211
    Number of Reflections(R-Work) 4023
    R-Factor(R-Work) 0.2553
    R-Factor(R-Free) 0.3179
    Percent Reflections(Observed) 89.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1556
    Shell Resolution(Low) 3.3219
    Number of Reflections(Observed) 4319
    Number of Reflections(R-Free) 221
    Number of Reflections(R-Work) 4098
    R-Factor(R-Work) 0.2271
    R-Factor(R-Free) 0.3086
    Percent Reflections(Observed) 91.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3219
    Shell Resolution(Low) 3.53
    Number of Reflections(Observed) 4376
    Number of Reflections(R-Free) 220
    Number of Reflections(R-Work) 4156
    R-Factor(R-Work) 0.2001
    R-Factor(R-Free) 0.2399
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.53
    Shell Resolution(Low) 3.8023
    Number of Reflections(Observed) 4501
    Number of Reflections(R-Free) 230
    Number of Reflections(R-Work) 4271
    R-Factor(R-Work) 0.1732
    R-Factor(R-Free) 0.2154
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8023
    Shell Resolution(Low) 4.1847
    Number of Reflections(Observed) 4723
    Number of Reflections(R-Free) 237
    Number of Reflections(R-Work) 4486
    R-Factor(R-Work) 0.1575
    R-Factor(R-Free) 0.2061
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.1847
    Shell Resolution(Low) 4.7894
    Number of Reflections(Observed) 4814
    Number of Reflections(R-Free) 241
    Number of Reflections(R-Work) 4573
    R-Factor(R-Work) 0.1326
    R-Factor(R-Free) 0.1742
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.7894
    Shell Resolution(Low) 6.0312
    Number of Reflections(Observed) 4908
    Number of Reflections(R-Free) 247
    Number of Reflections(R-Work) 4661
    R-Factor(R-Work) 0.1533
    R-Factor(R-Free) 0.1924
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.0312
    Shell Resolution(Low) 41.5456
    Number of Reflections(Observed) 5053
    Number of Reflections(R-Free) 251
    Number of Reflections(R-Work) 4802
    R-Factor(R-Work) 0.1601
    R-Factor(R-Free) 0.183
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 17.606
    f_plane_restr 0.006
    f_chiral_restr 0.072
    f_angle_d 1.201
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7684
    Nucleic Acid Atoms 0
    Heterogen Atoms 200
    Solvent Atoms 295
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHENIX
    Structure Refinement PHENIX (phenix.refine: 1.6.3_473)
     
    Software
    data extraction pdb_extract version: 3.11
    refinement phenix
    data reduction HKL