POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4ELH
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 5.8
    Temperature 298.0
    Details 16-22% PEG 3350, 0.2M CaCl2, 0.1M MES, +/- 3% glycerol , pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 68.35 α = 90
    b = 136.03 β = 90
    c = 168.36 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type MAR CCD 165 mm
    Collection Date 2011-08-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CAMD BEAMLINE GCPCC
    Wavelength List 1.38
    Site CAMD
    Beamline GCPCC
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.1
    Resolution(Low) 43.8
    Number Reflections(Observed) 90525
    Percent Possible(Observed) 98.5
    R Merge I(Observed) 0.058
    B(Isotropic) From Wilson Plot 21.5
    Redundancy 4.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.103
    Resolution(Low) 43.784
    Cut-off Sigma(F) 1.34
    Number of Reflections(Observed) 90400
    Number of Reflections(R-Free) 1994
    Percent Reflections(Observed) 98.35
    R-Factor(Observed) 0.1948
    R-Work 0.1935
    R-Free 0.2519
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 9.2144
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.8737
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -8.3407
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1034
    Shell Resolution(Low) 2.156
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 5992
    R-Factor(R-Work) 0.2187
    R-Factor(R-Free) 0.272
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.156
    Shell Resolution(Low) 2.2143
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 6256
    R-Factor(R-Work) 0.2266
    R-Factor(R-Free) 0.3373
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2143
    Shell Resolution(Low) 2.2795
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 6057
    R-Factor(R-Work) 0.2659
    R-Factor(R-Free) 0.369
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2795
    Shell Resolution(Low) 2.3531
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 6239
    R-Factor(R-Work) 0.2267
    R-Factor(R-Free) 0.317
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3531
    Shell Resolution(Low) 2.4371
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 6262
    R-Factor(R-Work) 0.2322
    R-Factor(R-Free) 0.3556
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4371
    Shell Resolution(Low) 2.5347
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 6245
    R-Factor(R-Work) 0.2193
    R-Factor(R-Free) 0.298
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5347
    Shell Resolution(Low) 2.6501
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 6262
    R-Factor(R-Work) 0.2177
    R-Factor(R-Free) 0.3033
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6501
    Shell Resolution(Low) 2.7898
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 6306
    R-Factor(R-Work) 0.2064
    R-Factor(R-Free) 0.2802
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7898
    Shell Resolution(Low) 2.9645
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 6381
    R-Factor(R-Work) 0.1988
    R-Factor(R-Free) 0.2601
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9645
    Shell Resolution(Low) 3.1933
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 6367
    R-Factor(R-Work) 0.1966
    R-Factor(R-Free) 0.2635
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1933
    Shell Resolution(Low) 3.5146
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 6419
    R-Factor(R-Work) 0.2014
    R-Factor(R-Free) 0.2521
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5146
    Shell Resolution(Low) 4.0228
    Number of Reflections(R-Free) 146
    Number of Reflections(R-Work) 6452
    R-Factor(R-Work) 0.1808
    R-Factor(R-Free) 0.2178
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.0228
    Shell Resolution(Low) 5.0671
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 6474
    R-Factor(R-Work) 0.136
    R-Factor(R-Free) 0.1708
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.0671
    Shell Resolution(Low) 43.7939
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 6694
    R-Factor(R-Work) 0.191
    R-Factor(R-Free) 0.2295
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.005
    f_chiral_restr 0.07
    f_dihedral_angle_d 16.737
    f_angle_d 1.106
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11034
    Nucleic Acid Atoms 0
    Heterogen Atoms 349
    Solvent Atoms 1280
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Refinement PHENIX (phenix.refine: 1.7.1_743)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.1_743)