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X-RAY DIFFRACTION
Materials and Methods page
4EEB
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 277.0
    Details Jeffamine M-600, CsCl, pH 6.5, temperature 277K, VAPOR DIFFUSION, HANGING DROP
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 125.6 α = 90
    b = 221.9 β = 90
    c = 106.8 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC CCD300
    Collection Date 2010-01-27
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type CLSI BEAMLINE 08ID-1
    Wavelength List 0.97934
    Site CLSI
    Beamline 08ID-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3.8
    Resolution(Low) 19.92
    Number Reflections(All) 24030
    Number Reflections(Observed) 24030
    Percent Possible(Observed) 80.4
    Redundancy 4.0
     
    High Resolution Shell Details
    Resolution(High) 3.8
    Resolution(Low) 3.9
    Percent Possible(All) 34.1
    Mean I Over Sigma(Observed) 3.3
    Redundancy 4.1
    Number Unique Reflections(All) 760
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.8
    Resolution(Low) 19.92
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 24030
    Number of Reflections(Observed) 24030
    Number of Reflections(R-Free) 1189
    Percent Reflections(Observed) 80.39
    R-Factor(All) 0.3009
    R-Factor(Observed) 0.3009
    R-Work 0.2987
    R-Free 0.3434
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 159.652
    Anisotropic B[1][1] 9.3
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -15.6
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 6.31
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8
    Shell Resolution(Low) 3.895
    Number of Reflections(Observed) 760
    Number of Reflections(R-Free) 28
    Number of Reflections(R-Work) 682
    R-Factor(R-Work) 0.414
    R-Factor(R-Free) 0.456
    Percent Reflections(Observed) 33.65
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.507
    r_scbond_it 0.796
    r_mcangle_it 1.348
    r_mcbond_other 0.074
    r_bond_refined_d 0.013
    r_bond_other_d 0.005
    r_angle_refined_deg 1.336
    r_angle_other_deg 0.919
    r_dihedral_angle_1_deg 6.83
    r_dihedral_angle_2_deg 38.571
    r_dihedral_angle_3_deg 19.101
    r_dihedral_angle_4_deg 17.241
    r_chiral_restr 0.071
    r_gen_planes_refined 0.006
    r_gen_planes_other 0.002
    r_mcbond_it 0.745
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 12978
    Nucleic Acid Atoms 0
    Heterogen Atoms 10
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MxDC
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0102
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement Phaser