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X-RAY DIFFRACTION
Materials and Methods page
4EE6
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8.5
    Temperature 277.0
    Details 200 mM magnesium chloride, 30% (w/v) PEG4000, Tris hydrochloride ph 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.14 α = 90
    b = 135.6 β = 95.73
    c = 48.53 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Collection Date 2010-08-16
     
    Diffraction Radiation
    Monochromator DCCM
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06DA
    Wavelength List 1.00000
    Site SLS
    Beamline X06DA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) -3.0
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.33
    Resolution(Low) 30
    Number Reflections(All) 123759
    Number Reflections(Observed) 115868
    Percent Possible(Observed) 93.6
     
    High Resolution Shell Details
    Resolution(High) 1.33
    Resolution(Low) 1.36
    Percent Possible(All) 63.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.33
    Resolution(Low) 29.93
    Number of Reflections(all) 112379
    Number of Reflections(Observed) 112379
    Number of Reflections(R-Free) 3476
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.19088
    R-Work 0.19019
    R-Free 0.21313
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 10.977
    Anisotropic B[1][1] -0.32
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.17
    Anisotropic B[2][2] -0.47
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.82
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.33
    Shell Resolution(Low) 1.364
    Number of Reflections(R-Free) 175
    Number of Reflections(R-Work) 5649
    R-Factor(R-Work) 0.233
    R-Factor(R-Free) 0.272
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.952
    r_scbond_it 1.554
    r_mcangle_it 1.162
    r_mcbond_other 0.463
    r_bond_refined_d 0.011
    r_bond_other_d 0.001
    r_angle_refined_deg 1.41
    r_angle_other_deg 0.94
    r_dihedral_angle_1_deg 5.925
    r_dihedral_angle_2_deg 33.202
    r_dihedral_angle_3_deg 12.005
    r_dihedral_angle_4_deg 11.894
    r_chiral_restr 0.089
    r_gen_planes_refined 0.007
    r_gen_planes_other 0.005
    r_mcbond_it 0.934
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4485
    Nucleic Acid Atoms 0
    Heterogen Atoms 39
    Solvent Atoms 804
     
     
  •   Software and Computing Hide
    Computing
    Data Collection SLS X06DA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement REFMAC 5.5.0109
     
    Software
    refinement REFMAC version: 5.5.0109
    model building PHASER
    data collection SLS version: X06DA