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X-RAY DIFFRACTION
Materials and Methods page
4EAF
  •   Crystallization Hide
    Crystallization Experiments
    Method LIQUID DIFFUSION
    Temperature 273.0
    Details COUNTER DIFFUSION, temperature 273K, LIQUID DIFFUSION
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 129.95 α = 90
    b = 129.95 β = 90
    c = 67.81 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type RAYONIX MX225HE
    Details mirrors
    Collection Date 2010-12-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.8
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 45.4
    Resolution(High) 1.52
    Resolution(Low) 30
    Number Reflections(Observed) 86831
    Percent Possible(Observed) 97.0
    R Merge I(Observed) 0.057
    Redundancy 7.4
     
    High Resolution Shell Details
    Resolution(High) 1.52
    Resolution(Low) 1.53
    Percent Possible(All) 92.9
    R Merge I(Observed) 0.404
    Mean I Over Sigma(Observed) 1.9
    R-Sym I(Observed) 0.404
    Redundancy 2.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.55
    Resolution(Low) 16.0
    Number of Reflections(Observed) 77911
    Number of Reflections(R-Free) 4120
    Percent Reflections(Observed) 97.22
    R-Factor(Observed) 0.16031
    R-Work 0.15784
    R-Free 0.20686
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.954
    Anisotropic B[1][1] -0.21
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.21
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.41
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.55
    Shell Resolution(Low) 1.59
    Number of Reflections(R-Free) 269
    Number of Reflections(R-Work) 5178
    R-Factor(R-Work) 0.322
    R-Factor(R-Free) 0.344
    Percent Reflections(Observed) 93.48
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 19.298
    r_bond_refined_d 0.006
    r_bond_other_d 0.005
    r_angle_refined_deg 1.102
    r_angle_other_deg 0.498
    r_dihedral_angle_1_deg 5.237
    r_dihedral_angle_2_deg 35.503
    r_dihedral_angle_3_deg 13.384
    r_dihedral_angle_4_deg 16.276
    r_chiral_restr 0.074
    r_gen_planes_refined 0.004
    r_rigid_bond_restr 2.373
    r_sphericity_free 33.753
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3306
    Nucleic Acid Atoms 0
    Heterogen Atoms 47
    Solvent Atoms 444
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection HKL-2000