POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4E9J
  •   Crystallization Hide
    Crystallization Experiments
    Method EVAPORATION
    pH 8.5
    Temperature 293.15
    Details 0.2M MgCl2, 0.1M Tris pH 8.5, 25% PEG3350, EVAPORATION, temperature 293.15K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 119.5 α = 90
    b = 39.72 β = 99.84
    c = 93.3 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength List 0.9193
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.03
    Resolution(Low) 39.67
    Number Reflections(Observed) 28407
    B(Isotropic) From Wilson Plot 32.42
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.03
    Resolution(Low) 45.96
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 28407
    Number of Reflections(Observed) 27839
    Number of Reflections(R-Free) 1382
    Percent Reflections(Observed) 98.29
    R-Factor(Observed) 0.2123
    R-Work 0.2104
    R-Free 0.2489
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 36.22
    Anisotropic B[1][1] 2.6839
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 1.304
    Anisotropic B[2][2] -1.6624
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.0215
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.03
    Shell Resolution(Low) 2.11
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2772
    R-Factor(R-Work) 0.2077
    R-Factor(R-Free) 0.2329
    Percent Reflections(Observed) 98.29
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_bond_d 0.01
    f_angle_deg 1.16
    f_omega_torsion 3.58
    f_other_torsion 14.51
     
    Coordinate Error
    Luzzati ESD(Observed) 0.262
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3100
    Nucleic Acid Atoms 0
    Heterogen Atoms 1
    Solvent Atoms 203
     
     
  •   Software and Computing Hide
    Computing
    Data Collection Proxima 1 Soleil
    Data Reduction (intensity integration) XDS, autoproc
    Data Reduction (data scaling) XSCALE, autoproc
    Structure Solution Phaser
    Structure Refinement Phenix + BUSTER 2.10.0
     
    Software
    refinement Phenix version: + BUSTER 2.10.0
    model building Phaser
    data collection Proxima version: 1 Soleil