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X-RAY DIFFRACTION
Materials and Methods page
4E6Z
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6
    Temperature 288.0
    Details 0.1M MES pH 6.0, 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 288K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.25 α = 90
    b = 66.25 β = 90
    c = 129.37 γ = 90
     
    Space Group
    Space Group Name:    P 41 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2009-10-25
     
    Diffraction Radiation
    Diffraction Protocol MAD
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I03
    Wavelength List 0.9800, 0.9802, 0.9537
    Site DIAMOND
    Beamline I03
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.15
    Resolution(Low) 46.28
    Number Reflections(All) 15234
    Number Reflections(Observed) 15234
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.1
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 2.15
    Resolution(Low) 2.27
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.627
    Mean I Over Sigma(Observed) 2.1
    Redundancy 5.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 2.1501
    Resolution(Low) 46.283
    Cut-off Sigma(F) 0.02
    Number of Reflections(all) 15234
    Number of Reflections(Observed) 15234
    Number of Reflections(R-Free) 774
    Percent Reflections(Observed) 93.11
    R-Factor(Observed) 0.2178
    R-Work 0.2166
    R-Free 0.2419
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -11.0741
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -11.0741
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 22.1483
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.1501
    Shell Resolution(Low) 2.2848
    Number of Reflections(R-Free) 116
    Number of Reflections(R-Work) 2114
    R-Factor(R-Work) 0.3128
    R-Factor(R-Free) 0.3515
    Percent Reflections(Observed) 84.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2848
    Shell Resolution(Low) 2.4612
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2228
    R-Factor(R-Work) 0.2509
    R-Factor(R-Free) 0.2712
    Percent Reflections(Observed) 88.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4612
    Shell Resolution(Low) 2.7089
    Number of Reflections(R-Free) 150
    Number of Reflections(R-Work) 2336
    R-Factor(R-Work) 0.2473
    R-Factor(R-Free) 0.3232
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7089
    Shell Resolution(Low) 3.1008
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 2481
    R-Factor(R-Work) 0.237
    R-Factor(R-Free) 0.2455
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1008
    Shell Resolution(Low) 3.9064
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2589
    R-Factor(R-Work) 0.1998
    R-Factor(R-Free) 0.2154
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9064
    Shell Resolution(Low) 46.2933
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 2712
    R-Factor(R-Work) 0.1907
    R-Factor(R-Free) 0.205
    Percent Reflections(Observed) 97.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.002
    f_chiral_restr 0.046
    f_dihedral_angle_d 17.686
    f_angle_d 0.634
    f_bond_d 0.003
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1659
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 27
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution SHARP
    Structure Refinement PHENIX (phenix.refine: 1.5_2)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.5_2)
    model building SHARP
    data collection ADSC version: Quantum