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X-RAY DIFFRACTION
Materials and Methods page
4E6N
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.75
    Temperature 303.0
    Details 6% PEG6000, 0.5M NACL, 25MM CACL2, 5% METHANOL, 50MM HEPES, 50 MM TRIS-HCL, pH 7.75, VAPOR DIFFUSION, HANGING DROP, temperature 303K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 59.63 α = 81.38
    b = 59.69 β = 87.82
    c = 101.54 γ = 88.82
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 21-ID-G
    Site APS
    Beamline 21-ID-G
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.39
    Resolution(Low) 50
    Number Reflections(All) 54876
    Number Reflections(Observed) 49244
    Percent Possible(Observed) 89.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.39
    Resolution(Low) 34.645
    Cut-off Sigma(F) 1.98
    Number of Reflections(all) 54966
    Number of Reflections(Observed) 49224
    Number of Reflections(R-Free) 1997
    Percent Reflections(Observed) 89.59
    R-Factor(Observed) 0.1699
    R-Work 0.1676
    R-Free 0.2225
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Anisotropic B[1][1] -8.074
    Anisotropic B[1][2] -4.3808
    Anisotropic B[1][3] 3.1162
    Anisotropic B[2][2] -3.1498
    Anisotropic B[2][3] -5.7785
    Anisotropic B[3][3] 11.2238
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.39
    Shell Resolution(Low) 2.4459
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 3083
    R-Factor(R-Work) 0.1905
    R-Factor(R-Free) 0.2744
    Percent Reflections(Observed) 83.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4459
    Shell Resolution(Low) 2.512
    Number of Reflections(R-Free) 159
    Number of Reflections(R-Work) 3573
    R-Factor(R-Work) 0.1793
    R-Factor(R-Free) 0.2529
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.512
    Shell Resolution(Low) 2.5859
    Number of Reflections(R-Free) 152
    Number of Reflections(R-Work) 3652
    R-Factor(R-Work) 0.1865
    R-Factor(R-Free) 0.2893
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5859
    Shell Resolution(Low) 2.6694
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 3642
    R-Factor(R-Work) 0.1897
    R-Factor(R-Free) 0.2528
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6694
    Shell Resolution(Low) 2.7647
    Number of Reflections(R-Free) 147
    Number of Reflections(R-Work) 3660
    R-Factor(R-Work) 0.18
    R-Factor(R-Free) 0.2832
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7647
    Shell Resolution(Low) 2.8754
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 3707
    R-Factor(R-Work) 0.1784
    R-Factor(R-Free) 0.238
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8754
    Shell Resolution(Low) 3.0062
    Number of Reflections(R-Free) 166
    Number of Reflections(R-Work) 3722
    R-Factor(R-Work) 0.1877
    R-Factor(R-Free) 0.2471
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0062
    Shell Resolution(Low) 3.1646
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 3704
    R-Factor(R-Work) 0.1761
    R-Factor(R-Free) 0.2516
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1646
    Shell Resolution(Low) 3.3627
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 3714
    R-Factor(R-Work) 0.1905
    R-Factor(R-Free) 0.2517
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3627
    Shell Resolution(Low) 3.6221
    Number of Reflections(R-Free) 97
    Number of Reflections(R-Work) 2446
    R-Factor(R-Work) 0.1823
    R-Factor(R-Free) 0.2356
    Percent Reflections(Observed) 68.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.6221
    Shell Resolution(Low) 3.9861
    Number of Reflections(R-Free) 52
    Number of Reflections(R-Work) 1282
    R-Factor(R-Work) 0.1664
    R-Factor(R-Free) 0.2217
    Percent Reflections(Observed) 49.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.9861
    Shell Resolution(Low) 4.5618
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 3636
    R-Factor(R-Work) 0.1438
    R-Factor(R-Free) 0.1789
    Percent Reflections(Observed) 97.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.5618
    Shell Resolution(Low) 5.7431
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 3715
    R-Factor(R-Work) 0.1401
    R-Factor(R-Free) 0.1788
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.7431
    Shell Resolution(Low) 34.6485
    Number of Reflections(R-Free) 158
    Number of Reflections(R-Work) 3711
    R-Factor(R-Work) 0.1572
    R-Factor(R-Free) 0.1899
    Percent Reflections(Observed) 98.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.074
    f_dihedral_angle_d 14.399
    f_angle_d 1.082
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10054
    Nucleic Acid Atoms 0
    Heterogen Atoms 46
    Solvent Atoms 430
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution Phenix
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7.3_928)
    model building Phenix
    data collection ADSC version: Quantum