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X-RAY DIFFRACTION
Materials and Methods page
4E52
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 7.5
    Temperature 293.0
    Details PEG 4000, Tris, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 55.35 α = 90
    b = 107.99 β = 92.14
    c = 55.65 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4r
    Collection Date 2007-06-24
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SRS BEAMLINE PX14.1
    Wavelength List 1.488
    Site SRS
    Beamline PX14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 26.75
    Number Reflections(Observed) 71591
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.075
    Redundancy 3.0
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.79
    Percent Possible(All) 99.9
    R Merge I(Observed) 0.295
    Mean I Over Sigma(Observed) 2.4
    R-Sym I(Observed) 0.295
    Redundancy 3.0
    Number Unique Reflections(All) 10454
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 26.748
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 71561
    Number of Reflections(R-Free) 3624
    Percent Reflections(Observed) 99.8
    R-Work 0.1922
    R-Free 0.21
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 24.3697
    Anisotropic B[1][1] -1.288
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -1.469
    Anisotropic B[2][2] -2.085
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 3.373
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.71
    Number of Reflections(R-Free) 72
    Number of Reflections(R-Work) 1349
    R-Factor(R-Work) 0.3483
    R-Factor(R-Free) 0.3163
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.71
    Shell Resolution(Low) 1.72
    Number of Reflections(R-Free) 68
    Number of Reflections(R-Work) 1372
    R-Factor(R-Work) 0.3409
    R-Factor(R-Free) 0.366
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.72
    Shell Resolution(Low) 1.74
    Number of Reflections(R-Free) 76
    Number of Reflections(R-Work) 1351
    R-Factor(R-Work) 0.3079
    R-Factor(R-Free) 0.3332
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.74
    Shell Resolution(Low) 1.75
    Number of Reflections(R-Free) 77
    Number of Reflections(R-Work) 1345
    R-Factor(R-Work) 0.2866
    R-Factor(R-Free) 0.3003
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.75
    Shell Resolution(Low) 1.76
    Number of Reflections(R-Free) 72
    Number of Reflections(R-Work) 1313
    R-Factor(R-Work) 0.2742
    R-Factor(R-Free) 0.3604
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.76
    Shell Resolution(Low) 1.77
    Number of Reflections(R-Free) 74
    Number of Reflections(R-Work) 1385
    R-Factor(R-Work) 0.2608
    R-Factor(R-Free) 0.2331
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.77
    Shell Resolution(Low) 1.79
    Number of Reflections(R-Free) 81
    Number of Reflections(R-Work) 1375
    R-Factor(R-Work) 0.2609
    R-Factor(R-Free) 0.2914
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.79
    Shell Resolution(Low) 1.8
    Number of Reflections(R-Free) 66
    Number of Reflections(R-Work) 1342
    R-Factor(R-Work) 0.2576
    R-Factor(R-Free) 0.2778
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.82
    Number of Reflections(R-Free) 67
    Number of Reflections(R-Work) 1333
    R-Factor(R-Work) 0.2468
    R-Factor(R-Free) 0.2236
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.82
    Shell Resolution(Low) 1.83
    Number of Reflections(R-Free) 78
    Number of Reflections(R-Work) 1360
    R-Factor(R-Work) 0.2398
    R-Factor(R-Free) 0.2678
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.83
    Shell Resolution(Low) 1.85
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 1349
    R-Factor(R-Work) 0.2284
    R-Factor(R-Free) 0.261
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.85
    Shell Resolution(Low) 1.86
    Number of Reflections(R-Free) 84
    Number of Reflections(R-Work) 1363
    R-Factor(R-Work) 0.236
    R-Factor(R-Free) 0.2338
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.86
    Shell Resolution(Low) 1.88
    Number of Reflections(R-Free) 61
    Number of Reflections(R-Work) 1332
    R-Factor(R-Work) 0.2123
    R-Factor(R-Free) 0.2461
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.88
    Shell Resolution(Low) 1.9
    Number of Reflections(R-Free) 71
    Number of Reflections(R-Work) 1386
    R-Factor(R-Work) 0.2018
    R-Factor(R-Free) 0.2052
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.91
    Number of Reflections(R-Free) 60
    Number of Reflections(R-Work) 1376
    R-Factor(R-Work) 0.2053
    R-Factor(R-Free) 0.2505
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.91
    Shell Resolution(Low) 1.93
    Number of Reflections(R-Free) 78
    Number of Reflections(R-Work) 1346
    R-Factor(R-Work) 0.1991
    R-Factor(R-Free) 0.218
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.93
    Shell Resolution(Low) 1.95
    Number of Reflections(R-Free) 67
    Number of Reflections(R-Work) 1360
    R-Factor(R-Work) 0.1972
    R-Factor(R-Free) 0.2362
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.95
    Shell Resolution(Low) 1.97
    Number of Reflections(R-Free) 74
    Number of Reflections(R-Work) 1361
    R-Factor(R-Work) 0.1999
    R-Factor(R-Free) 0.2204
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.97
    Shell Resolution(Low) 1.99
    Number of Reflections(R-Free) 85
    Number of Reflections(R-Work) 1337
    R-Factor(R-Work) 0.1903
    R-Factor(R-Free) 0.2237
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.99
    Shell Resolution(Low) 2.02
    Number of Reflections(R-Free) 78
    Number of Reflections(R-Work) 1335
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2432
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.02
    Shell Resolution(Low) 2.04
    Number of Reflections(R-Free) 60
    Number of Reflections(R-Work) 1407
    R-Factor(R-Work) 0.1965
    R-Factor(R-Free) 0.2033
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.04
    Shell Resolution(Low) 2.06
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 1354
    R-Factor(R-Work) 0.1962
    R-Factor(R-Free) 0.2334
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.06
    Shell Resolution(Low) 2.09
    Number of Reflections(R-Free) 58
    Number of Reflections(R-Work) 1326
    R-Factor(R-Work) 0.1835
    R-Factor(R-Free) 0.1762
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.09
    Shell Resolution(Low) 2.11
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1380
    R-Factor(R-Work) 0.1825
    R-Factor(R-Free) 0.2072
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.11
    Shell Resolution(Low) 2.14
    Number of Reflections(R-Free) 82
    Number of Reflections(R-Work) 1377
    R-Factor(R-Work) 0.176
    R-Factor(R-Free) 0.2297
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.14
    Shell Resolution(Low) 2.17
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 1333
    R-Factor(R-Work) 0.1827
    R-Factor(R-Free) 0.2163
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.17
    Shell Resolution(Low) 2.2
    Number of Reflections(R-Free) 84
    Number of Reflections(R-Work) 1350
    R-Factor(R-Work) 0.1869
    R-Factor(R-Free) 0.2169
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.24
    Number of Reflections(R-Free) 76
    Number of Reflections(R-Work) 1361
    R-Factor(R-Work) 0.1918
    R-Factor(R-Free) 0.246
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.24
    Shell Resolution(Low) 2.27
    Number of Reflections(R-Free) 65
    Number of Reflections(R-Work) 1356
    R-Factor(R-Work) 0.186
    R-Factor(R-Free) 0.1905
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.27
    Shell Resolution(Low) 2.31
    Number of Reflections(R-Free) 72
    Number of Reflections(R-Work) 1373
    R-Factor(R-Work) 0.1856
    R-Factor(R-Free) 0.2352
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.31
    Shell Resolution(Low) 2.35
    Number of Reflections(R-Free) 72
    Number of Reflections(R-Work) 1352
    R-Factor(R-Work) 0.1803
    R-Factor(R-Free) 0.1954
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.35
    Shell Resolution(Low) 2.39
    Number of Reflections(R-Free) 61
    Number of Reflections(R-Work) 1361
    R-Factor(R-Work) 0.1984
    R-Factor(R-Free) 0.2415
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.39
    Shell Resolution(Low) 2.44
    Number of Reflections(R-Free) 79
    Number of Reflections(R-Work) 1370
    R-Factor(R-Work) 0.2006
    R-Factor(R-Free) 0.2436
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.44
    Shell Resolution(Low) 2.49
    Number of Reflections(R-Free) 72
    Number of Reflections(R-Work) 1343
    R-Factor(R-Work) 0.1874
    R-Factor(R-Free) 0.2021
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.49
    Shell Resolution(Low) 2.54
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1378
    R-Factor(R-Work) 0.1907
    R-Factor(R-Free) 0.183
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.54
    Shell Resolution(Low) 2.6
    Number of Reflections(R-Free) 80
    Number of Reflections(R-Work) 1328
    R-Factor(R-Work) 0.1993
    R-Factor(R-Free) 0.2144
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.66
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1388
    R-Factor(R-Work) 0.193
    R-Factor(R-Free) 0.1686
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.66
    Shell Resolution(Low) 2.74
    Number of Reflections(R-Free) 60
    Number of Reflections(R-Work) 1356
    R-Factor(R-Work) 0.197
    R-Factor(R-Free) 0.2349
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.74
    Shell Resolution(Low) 2.82
    Number of Reflections(R-Free) 67
    Number of Reflections(R-Work) 1372
    R-Factor(R-Work) 0.1925
    R-Factor(R-Free) 0.2252
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.82
    Shell Resolution(Low) 2.91
    Number of Reflections(R-Free) 77
    Number of Reflections(R-Work) 1378
    R-Factor(R-Work) 0.1856
    R-Factor(R-Free) 0.191
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.91
    Shell Resolution(Low) 3.01
    Number of Reflections(R-Free) 60
    Number of Reflections(R-Work) 1351
    R-Factor(R-Work) 0.1959
    R-Factor(R-Free) 0.2306
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.01
    Shell Resolution(Low) 3.13
    Number of Reflections(R-Free) 79
    Number of Reflections(R-Work) 1364
    R-Factor(R-Work) 0.1922
    R-Factor(R-Free) 0.2142
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.13
    Shell Resolution(Low) 3.27
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1375
    R-Factor(R-Work) 0.1942
    R-Factor(R-Free) 0.216
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.27
    Shell Resolution(Low) 3.45
    Number of Reflections(R-Free) 67
    Number of Reflections(R-Work) 1381
    R-Factor(R-Work) 0.1864
    R-Factor(R-Free) 0.2138
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.45
    Shell Resolution(Low) 3.66
    Number of Reflections(R-Free) 65
    Number of Reflections(R-Work) 1366
    R-Factor(R-Work) 0.17
    R-Factor(R-Free) 0.1784
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.66
    Shell Resolution(Low) 3.95
    Number of Reflections(R-Free) 74
    Number of Reflections(R-Work) 1373
    R-Factor(R-Work) 0.168
    R-Factor(R-Free) 0.1695
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.95
    Shell Resolution(Low) 4.34
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1368
    R-Factor(R-Work) 0.1525
    R-Factor(R-Free) 0.1405
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.34
    Shell Resolution(Low) 4.97
    Number of Reflections(R-Free) 88
    Number of Reflections(R-Work) 1355
    R-Factor(R-Work) 0.1548
    R-Factor(R-Free) 0.1683
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.97
    Shell Resolution(Low) 6.26
    Number of Reflections(R-Free) 71
    Number of Reflections(R-Work) 1368
    R-Factor(R-Work) 0.2103
    R-Factor(R-Free) 0.2607
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.26
    Shell Resolution(Low) 500.01
    Number of Reflections(R-Free) 69
    Number of Reflections(R-Work) 1323
    R-Factor(R-Work) 0.1929
    R-Factor(R-Free) 0.1886
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 2.995
    c_mcangle_it 1.645
    c_scbond_it 2.006
    c_mcbond_it 1.1
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3483
    Nucleic Acid Atoms 0
    Heterogen Atoms 53
    Solvent Atoms 531
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Refinement CNS
     
    Software
    data extraction pdb_extract version: 3.10
    refinement CNS
    data reduction SCALA version: 3.1.4
    data collection Mosflm