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X-RAY DIFFRACTION
Materials and Methods page
4E40
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.6
    Temperature 288.0
    Details 5% PEG 12,000, 0.1M sodium acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 288K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 104.53 α = 90
    b = 104.53 β = 90
    c = 113.07 γ = 120
     
    Space Group
    Space Group Name:    P 65 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 300 mm CCD
    Collection Date 2010-10-21
     
    Diffraction Radiation
    Monochromator single bounce
     
    Diffraction Source
    Source SYNCHROTRON
    Type DIAMOND BEAMLINE I04-1
    Wavelength List 0.916
    Site DIAMOND
    Beamline I04-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.6
    Resolution(Low) 90.53
    Number Reflections(All) 46112
    Number Reflections(Observed) 46112
    Percent Possible(Observed) 100.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MIR
    reflnsShellList 1.6
    Resolution(Low) 90.53
    Number of Reflections(all) 46112
    Number of Reflections(Observed) 46112
    Number of Reflections(R-Free) 2455
    Percent Reflections(Observed) 99.67
    R-Factor(All) 0.20677
    R-Factor(Observed) 0.20677
    R-Work 0.20588
    R-Free 0.22332
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 27.906
    Anisotropic B[1][1] 0.47
    Anisotropic B[1][2] 0.23
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.47
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.7
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.598
    Shell Resolution(Low) 1.64
    Number of Reflections(R-Free) 165
    Number of Reflections(R-Work) 3088
    R-Factor(R-Work) 0.266
    R-Factor(R-Free) 0.334
    Percent Reflections(Observed) 99.66
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.009
    r_chiral_restr 0.125
    r_dihedral_angle_4_deg 19.263
    r_dihedral_angle_3_deg 14.876
    r_dihedral_angle_2_deg 38.301
    r_dihedral_angle_1_deg 4.126
    r_angle_refined_deg 1.818
    r_bond_refined_d 0.018
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1828
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 263
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DNA
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution SHARP
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building SHARP
    data collection DNA