X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 7
Temperature 296.0
Details 20mM Cacodylate; 6mM Spermine*HCl; 40mM NaCl; 10mM BaCl2 5% 2-M-2,4PD, pH 7.0, VAPOR DIFFUSION, temperature 296K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 24.04 α = 74.67
b = 24.8 β = 84.42
c = 37.52 γ = 76.21
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2010-12-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL12-2 .7749 SSRL BL12-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
0.92 36 82.7 0.03 0.03 -- 3.9 -- 46920 -1.0 -1.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 0.92 23.33 -- 1.98 -- 46920 4695 81.74 -- 0.1401 0.1397 0.149 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 0.92 0.9305 -- 88 1572 0.2866 0.3264 -- 45.0
X Ray Diffraction 0.9305 0.9414 -- 116 2133 0.2697 0.291 -- 60.0
X Ray Diffraction 0.9414 0.9529 -- 143 2743 0.2642 0.2969 -- 75.0
X Ray Diffraction 0.9529 0.965 -- 149 2817 0.2504 0.2756 -- 80.0
X Ray Diffraction 0.965 0.9777 -- 142 2890 0.2157 0.2312 -- 81.0
X Ray Diffraction 0.9777 0.9911 -- 157 2956 0.2046 0.2629 -- 82.0
X Ray Diffraction 0.9911 1.0052 -- 146 2834 0.1955 0.2218 -- 80.0
X Ray Diffraction 1.0052 1.0202 -- 156 2788 0.1824 0.2175 -- 81.0
X Ray Diffraction 1.0202 1.0362 -- 131 2910 0.1802 0.1964 -- 78.0
X Ray Diffraction 1.0362 1.0532 -- 156 2721 0.1664 0.1948 -- 79.0
X Ray Diffraction 1.0532 1.0713 -- 156 3082 0.153 0.182 -- 85.0
X Ray Diffraction 1.0713 1.0908 -- 156 3040 0.147 0.1612 -- 85.0
X Ray Diffraction 1.0908 1.1118 -- 173 3029 0.1409 0.1522 -- 87.0
X Ray Diffraction 1.1118 1.1345 -- 165 3079 0.1354 0.1746 -- 85.0
X Ray Diffraction 1.1345 1.1592 -- 192 2952 0.1297 0.1443 -- 84.0
X Ray Diffraction 1.1592 1.1861 -- 174 2895 0.1253 0.1507 -- 82.0
X Ray Diffraction 1.1861 1.2158 -- 150 2681 0.1234 0.1398 -- 76.0
X Ray Diffraction 1.2158 1.2487 -- 170 3184 0.1196 0.1276 -- 88.0
X Ray Diffraction 1.2487 1.2854 -- 157 3076 0.1141 0.1467 -- 87.0
X Ray Diffraction 1.2854 1.3269 -- 204 3108 0.1062 0.1195 -- 88.0
X Ray Diffraction 1.3269 1.3743 -- 167 3142 0.1073 0.1321 -- 88.0
X Ray Diffraction 1.3743 1.4293 -- 153 3130 0.1073 0.1351 -- 87.0
X Ray Diffraction 1.4293 1.4944 -- 190 2856 0.1042 0.1324 -- 81.0
X Ray Diffraction 1.4944 1.5731 -- 145 3048 0.115 0.1286 -- 85.0
X Ray Diffraction 1.5731 1.6717 -- 172 3226 0.1197 0.1122 -- 90.0
X Ray Diffraction 1.6717 1.8007 -- 171 3103 0.1237 0.1357 -- 88.0
X Ray Diffraction 1.8007 1.9818 -- 122 3153 0.1319 0.1502 -- 87.0
X Ray Diffraction 1.9818 2.2684 -- 142 2904 0.139 0.1521 -- 81.0
X Ray Diffraction 2.2684 2.8571 -- 197 3157 0.1604 0.1553 -- 90.0
X Ray Diffraction 2.8571 23.3378 -- 155 3110 0.1524 0.1494 -- 86.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -0.2315
Anisotropic B[1][2] -1.9032
Anisotropic B[1][3] 0.7312
Anisotropic B[2][2] 1.5877
Anisotropic B[2][3] 0.3666
Anisotropic B[3][3] -1.3562
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.017
f_chiral_restr 0.074
f_dihedral_angle_d 34.206
f_angle_d 1.62
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 488
Heterogen Atoms 237
Solvent Atoms 197

Software

Computing
Computing Package Purpose
BluIce Data Collection
XDS Data Reduction (intensity integration)
SCALA Data Reduction (data scaling)
SHELXD Structure Solution
PHENIX (phenix.refine: 1.7.3_928) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
SHELXD model building
BluIce data collection