X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.4
Temperature 293.0
Details 5% (w/v) PEG 4000, 10mM Tris-HCl, 300mM NaCl , pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 117.58 α = 90
b = 119.69 β = 113.94
c = 62.94 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 96
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR ADSC QUANTUM 315 -- 2009-06-08
Diffraction Radiation
Monochromator Protocol
Si 111 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 14-BM-C 0.900 APS 14-BM-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.94 50 83.2 -- -- -- -- 3 58879 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 39.983 -- 1.33 32047 32038 1619 79.37 -- 0.2037 0.2012 0.2492 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2002 2.2649 -- 70 1500 0.2214 0.3792 -- 47.0
X Ray Diffraction 2.2649 2.338 -- 80 1642 0.2261 0.3084 -- 51.0
X Ray Diffraction 2.338 2.4216 -- 100 1823 0.243 0.2563 -- 57.0
X Ray Diffraction 2.4216 2.5185 -- 104 2044 0.2538 0.299 -- 64.0
X Ray Diffraction 2.5185 2.6331 -- 133 2254 0.2702 0.3083 -- 71.0
X Ray Diffraction 2.6331 2.7719 -- 117 2495 0.2638 0.3347 -- 79.0
X Ray Diffraction 2.7719 2.9455 -- 151 2812 0.2669 0.3211 -- 88.0
X Ray Diffraction 2.9455 3.1729 -- 165 3107 0.256 0.3075 -- 97.0
X Ray Diffraction 3.1729 3.492 -- 185 3150 0.1938 0.2393 -- 99.0
X Ray Diffraction 3.492 3.9969 -- 163 3182 0.1681 0.2414 -- 99.0
X Ray Diffraction 3.9969 5.0341 -- 178 3168 0.1517 0.1837 -- 99.0
X Ray Diffraction 5.0341 39.9894 -- 173 3242 0.1647 0.1989 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 2.6852
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -1.0303
Anisotropic B[2][2] 2.4322
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -12.312
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.088
f_dihedral_angle_d 20.969
f_angle_d 1.467
f_bond_d 0.011
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2528
Nucleic Acid Atoms 593
Heterogen Atoms 29
Solvent Atoms 436

Software

Computing
Computing Package Purpose
ADSC Quantum Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHASER Structure Solution
PHENIX (phenix.refine: dev_1145) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement
PHASER model building
ADSC version: Quantum data collection