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X-RAY DIFFRACTION
Materials and Methods page
4E06
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.5
    Temperature 293.0
    Details 100 mM sodium acetate, pH 4.5, 3 M sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 209.66 α = 90
    b = 209.66 β = 90
    c = 127.41 γ = 120
     
    Space Group
    Space Group Name:    H 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type DECTRIS PILATUS 6M
    Collection Date 2010-09-30
     
    Diffraction Radiation
    Monochromator channel-cut Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength List 0.9763
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3.2
    Resolution(Low) 46.83
    Number Reflections(All) 17855
    Number Reflections(Observed) 17855
    Percent Possible(Observed) 99.8
    Redundancy 5.1
     
    High Resolution Shell Details
    Resolution(High) 3.196
    Resolution(Low) 3.37
    Percent Possible(All) 98.8
    R Merge I(Observed) 0.807
    Mean I Over Sigma(Observed) 1.0
    R-Sym I(Observed) 0.807
    Redundancy 4.9
    Number Unique Reflections(All) 2578
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.196
    Resolution(Low) 46.833
    Cut-off Sigma(F) 1.35
    Number of Reflections(all) 17855
    Number of Reflections(Observed) 17852
    Number of Reflections(R-Free) 911
    Percent Reflections(Observed) 99.72
    R-Factor(Observed) 0.1782
    R-Work 0.1766
    R-Free 0.2079
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.5621
    Anisotropic B[1][1] -15.9794
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -15.9794
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 31.9588
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.196
    Shell Resolution(Low) 3.3641
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2380
    R-Factor(R-Work) 0.3169
    R-Factor(R-Free) 0.3389
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3641
    Shell Resolution(Low) 3.5749
    Number of Reflections(R-Free) 123
    Number of Reflections(R-Work) 2379
    R-Factor(R-Work) 0.2351
    R-Factor(R-Free) 0.2701
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.5749
    Shell Resolution(Low) 3.8508
    Number of Reflections(R-Free) 140
    Number of Reflections(R-Work) 2395
    R-Factor(R-Work) 0.1781
    R-Factor(R-Free) 0.2144
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8508
    Shell Resolution(Low) 4.238
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2420
    R-Factor(R-Work) 0.1492
    R-Factor(R-Free) 0.1932
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.238
    Shell Resolution(Low) 4.8507
    Number of Reflections(R-Free) 124
    Number of Reflections(R-Work) 2413
    R-Factor(R-Work) 0.1231
    R-Factor(R-Free) 0.1509
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.8507
    Shell Resolution(Low) 6.1093
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2443
    R-Factor(R-Work) 0.1516
    R-Factor(R-Free) 0.1698
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 6.1093
    Shell Resolution(Low) 46.8381
    Number of Reflections(R-Free) 117
    Number of Reflections(R-Work) 2511
    R-Factor(R-Work) 0.1929
    R-Factor(R-Free) 0.227
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 16.912
    f_plane_restr 0.005
    f_chiral_restr 0.087
    f_angle_d 1.297
    f_bond_d 0.011
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2474
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 23
     
     
  •   Software and Computing Hide
    Computing
    Data Collection DNA
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7.2_869)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    molecular replacement Phaser
    data reduction SCALA version: 3.3.16