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X-RAY DIFFRACTION
Materials and Methods page
4DX9
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 293.0
    Details 1.2M sodium citrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 75.62 α = 89.97
    b = 122.21 β = 89.99
    c = 135.27 γ = 108.11
     
    Space Group
    Space Group Name:    P 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type DECTRIS PILATUS 6M
    Collection Date 2011-12-06
     
    Diffraction Radiation
    Monochromator Si
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type NSLS BEAMLINE X25
    Wavelength List 0.97860
    Site NSLS
    Beamline X25
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.99
    Resolution(Low) 50.01
    Number Reflections(All) 91718
    Number Reflections(Observed) 91718
    Percent Possible(Observed) 98.8
    Redundancy 13.3
     
    High Resolution Shell Details
    Resolution(High) 2.99
    Resolution(Low) 3.11
    Percent Possible(All) 98.8
    Mean I Over Sigma(Observed) 2.3
    Redundancy 13.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.99
    Resolution(Low) 50.01
    Number of Reflections(all) 91031
    Number of Reflections(Observed) 85975
    Number of Reflections(R-Free) 5056
    Percent Reflections(Observed) 98.2
    R-Factor(Observed) 0.2546
    R-Work 0.25129
    R-Free 0.31194
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 90.204
    Anisotropic B[1][1] 5.85
    Anisotropic B[1][2] 3.25
    Anisotropic B[1][3] 11.87
    Anisotropic B[2][2] 53.99
    Anisotropic B[2][3] 11.38
    Anisotropic B[3][3] -59.84
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.99
    Shell Resolution(Low) 3.072
    Number of Reflections(R-Free) 635
    Number of Reflections(R-Work) 5512
    R-Factor(R-Work) 0.22
    R-Factor(R-Free) 0.304
    Percent Reflections(Observed) 89.83
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.004
    r_chiral_restr 0.047
    r_dihedral_angle_4_deg 14.206
    r_dihedral_angle_3_deg 17.111
    r_dihedral_angle_2_deg 36.526
    r_dihedral_angle_1_deg 3.982
    r_angle_refined_deg 0.813
    r_bond_refined_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 29306
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Collection CBASS
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution phenix.autosol
    Structure Refinement REFMAC 5.6.0117
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5 version: 5.6.0117