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X-RAY DIFFRACTION
Materials and Methods page
4DVH
  •   Crystallization Hide
    Crystallization Experiments
    pH 8.5
    Temperature 291.0
    Details 30% PEG 4000, 0.1M Tris.HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 47.17 α = 90
    b = 74.55 β = 96.81
    c = 56.85 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type MAR scanner 345 mm plate
    Collection Date 2011-11-01
     
    Diffraction Radiation
    Monochromator Varimax-HF Multilayer mirrors
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU MICROMAX-007 HF
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.23
    Resolution(Low) 39.64
    Number Reflections(All) 18138
    Number Reflections(Observed) 18138
    Percent Possible(Observed) 93.1
    Redundancy 6.5
     
    High Resolution Shell Details
    Resolution(High) 2.21
    Resolution(Low) 2.33
    Percent Possible(All) 73.6
    R Merge I(Observed) 0.351
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.351
    Redundancy 5.8
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.23
    Resolution(Low) 24.17
    Number of Reflections(all) 18121
    Number of Reflections(R-Free) 1368
    Percent Reflections(Observed) 98.6
    R-Factor(Observed) 0.172
    R-Work 0.168
    R-Free 0.22
     
    Temperature Factor Modeling
    Isotropic Thermal Model isotropic with TLS
    Mean Isotropic B Value 28.56
    Anisotropic B[1][1] 7.3967
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.3815
    Anisotropic B[2][2] -9.129
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.7322
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.23
    Shell Resolution(Low) 2.37
    Number of Reflections(R-Free) 221
    Number of Reflections(R-Work) 2730
    R-Factor(R-Work) 0.1914
    R-Factor(R-Free) 0.2828
    Percent Reflections(Observed) 98.61
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_bond_d 0.01
    t_angle_deg 1.09
     
    Coordinate Error
    Luzzati ESD(Observed) 0.23
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3227
    Nucleic Acid Atoms 0
    Heterogen Atoms 2
    Solvent Atoms 102
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MAR345dtb
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution AMoRE
    Structure Refinement BUSTER 2.10.0
     
    Software
    data extraction pdb_extract version: 3.10
    refinement REFMAC5
    molecular replacement AMORE
    data reduction SCALA version: 3.3.20
    data collection Mosflm