X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Counter Diffusion
Temperature 273.0
Details Counter diffusion, temperature 273K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 157.94 α = 90
b = 157.94 β = 90
c = 104.44 γ = 120
Symmetry
Space Group P 63 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2011-10-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8 SPRING-8 BL41XU

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.57 30 98.2 -- -- -- -- 103675 101808 0.0 -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.57 10.0 -- -- -- 98844 5203 98.2 -- 0.15173 0.15091 0.1672 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.57 1.613 -- 372 6447 0.287 0.3 -- 94.96
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.759
Anisotropic B[1][1] -0.52
Anisotropic B[1][2] -0.26
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.52
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.79
RMS Deviations
Key Refinement Restraint Deviation
r_sphericity_bonded 11.462
r_sphericity_free 23.14
r_rigid_bond_restr 1.405
r_gen_planes_refined 0.005
r_chiral_restr 0.08
r_dihedral_angle_4_deg 14.167
r_dihedral_angle_3_deg 11.088
r_dihedral_angle_2_deg 29.669
r_dihedral_angle_1_deg 5.892
r_angle_refined_deg 1.125
r_bond_refined_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2581
Nucleic Acid Atoms 0
Heterogen Atoms 174
Solvent Atoms 300

Software

Computing
Computing Package Purpose
HKL-2000 Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
PHASER Structure Solution
REFMAC 5.6.0117 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.6.0117 refinement
PHASER model building
HKL-2000 data collection