X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 6.1
Temperature 277.15
Details 20% (w/v) PEG3350, 0.2 M NaCl, 0.1 M bis-Tris, pH 6.1, VAPOR DIFFUSION, temperature 277.15K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.16 α = 90
b = 73.77 β = 102.73
c = 91.75 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2011-02-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.98 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.96 59.15 98.8 -- -- -- -- 61074 60335 -- 11.98 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.96 2.01 95.5 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.96 44.747 -- 1.34 61074 60303 2000 98.83 -- 0.1751 0.1736 0.2189 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9601 2.0091 -- 138 4014 0.2632 0.3217 -- 96.0
X Ray Diffraction 2.0091 2.0634 -- 143 4155 0.2564 0.3184 -- 100.0
X Ray Diffraction 2.0634 2.1241 -- 143 4187 0.24 0.3043 -- 100.0
X Ray Diffraction 2.1241 2.1927 -- 143 4172 0.2303 0.2902 -- 99.0
X Ray Diffraction 2.1927 2.271 -- 142 4151 0.2128 0.3056 -- 99.0
X Ray Diffraction 2.271 2.362 -- 143 4150 0.2014 0.2908 -- 99.0
X Ray Diffraction 2.362 2.4694 -- 143 4171 0.1956 0.2391 -- 99.0
X Ray Diffraction 2.4694 2.5996 -- 142 4163 0.1863 0.2191 -- 99.0
X Ray Diffraction 2.5996 2.7625 -- 143 4163 0.1816 0.2281 -- 99.0
X Ray Diffraction 2.7625 2.9757 -- 143 4164 0.1746 0.2275 -- 99.0
X Ray Diffraction 2.9757 3.2751 -- 143 4185 0.1706 0.2106 -- 99.0
X Ray Diffraction 3.2751 3.7488 -- 144 4171 0.1524 0.1989 -- 99.0
X Ray Diffraction 3.7488 4.7223 -- 144 4218 0.1348 0.1856 -- 99.0
X Ray Diffraction 4.7223 44.759 -- 146 4239 0.154 0.1677 -- 98.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -4.7527
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 5.2108
Anisotropic B[2][2] -1.9212
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 6.6739
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.009
f_chiral_restr 0.131
f_dihedral_angle_d 16.087
f_angle_d 1.757
f_bond_d 0.019
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5822
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 443

Software

Computing
Computing Package Purpose
XIA II Data Reduction (intensity integration)
XIA II Data Reduction (data scaling)
PHENIX (phenix.refine: 1.8.2_1309) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.3_928) refinement