POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
4DTD
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.3
    Temperature 293.0
    Details mixing 300 nL of protein at 13mg/mL with 100 nL of 2.17 M AmSO4, 0.1 M Bi-Tris pH 7.0 , VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 128.08 α = 90
    b = 128.08 β = 90
    c = 76.52 γ = 90
     
    Space Group
    Space Group Name:    P 43 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 6M
    Collection Date 2011-12-16
     
    Diffraction Radiation
    Monochromator KIRKPATRICK-BAEZ PAIR OF BI- MORPH MIRRORS PLUS CHANNEL CUT CRYOGENICALLY COOLED MONOCHROMATOR CRYSTAL
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SOLEIL BEAMLINE PROXIMA 1
    Wavelength 0.97918
    Site SOLEIL
    Beamline PROXIMA 1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.5
    Resolution(Low) 49.1
    Number Reflections(Observed) 22710
    Percent Possible(Observed) 100.0
    R Merge I(Observed) 0.07
    B(Isotropic) From Wilson Plot 64.05
    Redundancy 17.3
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.63
    Percent Possible(All) 99.5
    R Merge I(Observed) 0.56
    Mean I Over Sigma(Observed) 5.0
    Redundancy 17.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method SAD
    reflnsShellList 2.5
    Resolution(Low) 45.86
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 22605
    Number of Reflections(Observed) 22605
    Number of Reflections(R-Free) 1154
    R-Factor(Observed) 0.188
    R-Work 0.187
    R-Free 0.213
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 62.24
    Anisotropic B[1][1] -10.0066
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -10.0066
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 20.0131
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.62
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2810
    R-Factor(R-Work) 0.2109
    R-Factor(R-Free) 0.29
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_ideal_dist_contact 0.0
    t_chiral_improper_torsion 0.0
    t_bond_d 0.01
    t_angle_deg 1.18
    t_omega_torsion 2.96
    t_other_torsion 20.15
     
    Coordinate Error
    Luzzati ESD(Observed) 0.34
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2769
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 160
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement BUSTER 2.9.2
     
    Software
    refinement BUSTER version: 2.9.2