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X-RAY DIFFRACTION
Materials and Methods page
4DPL
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 4.6
    Temperature 291.0
    Details 33% PEP 426, 0.1 M NaOAc, 0.15 M (NH4)2SO4, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 94.58 α = 90
    b = 128.8 β = 90
    c = 140.37 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector PIXEL
    Type PSI PILATUS 6M
    Collection Date 2011-11-04
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X10SA
    Wavelength List 1.0
    Site SLS
    Beamline X10SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.9
    Resolution(Low) 50
    Number Reflections(All) 135044
    Number Reflections(Observed) 135044
    Percent Possible(Observed) 99.8
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 2.0
    Percent Possible(All) 99.5
    Mean I Over Sigma(Observed) 3.4
    R-Sym I(Observed) 0.579
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 20.0
    Number of Reflections(all) 128183
    Number of Reflections(Observed) 127753
    Number of Reflections(R-Free) 6764
    Percent Reflections(Observed) 99.5
    R-Factor(Observed) 0.1649
    R-Work 0.16332
    R-Free 0.19411
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 34.979
    Anisotropic B[1][1] -1.14
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.11
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.03
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.949
    Number of Reflections(R-Free) 452
    Number of Reflections(R-Work) 8728
    R-Factor(R-Work) 0.253
    R-Factor(R-Free) 0.294
    Percent Reflections(Observed) 98.28
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_gen_planes_refined 0.008
    r_chiral_restr 0.137
    r_dihedral_angle_1_deg 6.71
    r_angle_refined_deg 1.82
    r_bond_refined_d 0.021
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10961
    Nucleic Acid Atoms 0
    Heterogen Atoms 216
    Solvent Atoms 887
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XDS
    Structure Solution Phaser
    Structure Refinement REFMAC 5.6.0095
     
    Software
    refinement REFMAC version: 5.6.0095
    model building Phaser