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X-RAY DIFFRACTION
Materials and Methods page
4DON
  •   Crystallization Hide
    Crystallization Experiments
    Method vapor diffusion, hanging drop
    Temperature 293.0
    Details 3.6M Naformate, 10% glycerol, vapor diffusion, hanging drop, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 32.84 α = 90
    b = 47 β = 90
    c = 78.73 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315
    Collection Date 2011-12-20
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRF BEAMLINE BL17U
    Wavelength List 0.979
    Site SSRF
    Beamline BL17U
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.52
    Resolution(Low) 30.31
    Number Reflections(All) 27637
    Number Reflections(Observed) 19456
    Percent Possible(Observed) 97.8
    R Merge I(Observed) 0.186
    B(Isotropic) From Wilson Plot 21.413
     
    High Resolution Shell Details
    Resolution(High) 1.34
    Resolution(Low) 1.42
    Percent Possible(All) 87.9
    R Merge I(Observed) 0.01
    Mean I Over Sigma(Observed) 0.87
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.52
    Resolution(Low) 30.309
    Cut-off Sigma(F) 1.99
    Number of Reflections(Observed) 19328
    Number of Reflections(R-Free) 580
    Percent Reflections(Observed) 99.44
    R-Factor(Observed) 0.2016
    R-Work 0.2011
    R-Free 0.2183
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 25.1107
    Anisotropic B[1][1] 17.6776
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -10.4225
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -7.2551
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.52
    Shell Resolution(Low) 1.6729
    Number of Reflections(R-Free) 143
    Number of Reflections(R-Work) 4610
    R-Factor(R-Work) 0.2986
    R-Factor(R-Free) 0.3172
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6729
    Shell Resolution(Low) 1.9149
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 4642
    R-Factor(R-Work) 0.2281
    R-Factor(R-Free) 0.2724
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9149
    Shell Resolution(Low) 2.4125
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 4663
    R-Factor(R-Work) 0.1853
    R-Factor(R-Free) 0.2137
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.4125
    Shell Resolution(Low) 30.315
    Number of Reflections(R-Free) 149
    Number of Reflections(R-Work) 4833
    R-Factor(R-Work) 0.1839
    R-Factor(R-Free) 0.1886
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 11.665
    f_plane_restr 0.005
    f_chiral_restr 0.064
    f_angle_d 0.952
    f_bond_d 0.005
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1037
    Nucleic Acid Atoms 0
    Heterogen Atoms 12
    Solvent Atoms 129
     
     
  •   Software and Computing Hide
    Computing
    Data Collection ADSC Quantum
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) XSCALE
    Structure Solution PHASER
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix
    molecular replacement Phaser version: 2.1.4
    data reduction Xscale