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X-RAY DIFFRACTION
Materials and Methods page
4DJL
  •   Crystallization Hide
    Crystallization Experiments
    Method Counter diffusion
    Temperature 273.0
    Details Counter diffusion, temperature 273K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 157.95 α = 90
    b = 157.95 β = 90
    c = 104.2 γ = 120
     
    Space Group
    Space Group Name:    P 63 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARMOSAIC 225 mm CCD
    Details mirrors
    Collection Date 2011-10-09
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SPRING-8 BEAMLINE BL41XU
    Wavelength List 0.8
    Site SPRING-8
    Beamline BL41XU
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.5
    Resolution(Low) 30
    Number Reflections(All) 122643
    Number Reflections(Observed) 122520
    Percent Possible(Observed) 99.9
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.55
    Resolution(Low) 16.0
    Number of Reflections(Observed) 104766
    Number of Reflections(R-Free) 5518
    Percent Reflections(Observed) 99.88
    R-Factor(Observed) 0.157
    R-Work 0.15611
    R-Free 0.17405
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 15.916
    Anisotropic B[1][1] -0.07
    Anisotropic B[1][2] -0.03
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -0.07
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.1
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.55
    Shell Resolution(Low) 1.59
    Number of Reflections(R-Free) 391
    Number of Reflections(R-Work) 7098
    R-Factor(R-Work) 0.32
    R-Factor(R-Free) 0.332
    Percent Reflections(Observed) 99.77
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 9.77
    r_sphericity_free 21.378
    r_rigid_bond_restr 1.627
    r_gen_planes_refined 0.004
    r_chiral_restr 0.077
    r_dihedral_angle_4_deg 14.185
    r_dihedral_angle_3_deg 11.433
    r_dihedral_angle_2_deg 29.696
    r_dihedral_angle_1_deg 5.992
    r_angle_refined_deg 1.121
    r_bond_refined_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2581
    Nucleic Acid Atoms 0
    Heterogen Atoms 211
    Solvent Atoms 280
     
     
  •   Software and Computing Hide
    Computing
    Data Collection HKL-2000
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement REFMAC 5.6.0117
     
    Software
    refinement REFMAC version: 5.6.0117
    model building PHASER
    data collection HKL-2000