X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 4
Temperature 291.0
Details 2.3M ammonium sulfate, 0.1M sodium acetate pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 126.1 α = 90
b = 126.1 β = 90
c = 297.98 γ = 120
Symmetry
Space Group P 31 2 1

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9 AUSTRALIAN SYNCHROTRON MX2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 19.82 -- -- -- -- -- 115253 115053 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 19.82 -- 0.34 -- 115053 5775 94.11 -- 0.1603 0.1578 0.2058 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.3261 -- 196 3650 0.192 0.2721 -- 96.0
X Ray Diffraction 2.3261 2.3534 -- 195 3675 0.2034 0.2766 -- 96.0
X Ray Diffraction 2.3534 2.3821 -- 193 3695 0.203 0.2441 -- 96.0
X Ray Diffraction 2.3821 2.4122 -- 187 3609 0.1924 0.2652 -- 96.0
X Ray Diffraction 2.4122 2.4439 -- 193 3674 0.1922 0.257 -- 96.0
X Ray Diffraction 2.4439 2.4773 -- 187 3682 0.192 0.2677 -- 96.0
X Ray Diffraction 2.4773 2.5126 -- 201 3658 0.1945 0.2587 -- 96.0
X Ray Diffraction 2.5126 2.55 -- 184 3667 0.175 0.2628 -- 96.0
X Ray Diffraction 2.55 2.5898 -- 198 3661 0.1634 0.2141 -- 95.0
X Ray Diffraction 2.5898 2.6322 -- 188 3688 0.1638 0.2286 -- 95.0
X Ray Diffraction 2.6322 2.6774 -- 168 3698 0.1748 0.2498 -- 95.0
X Ray Diffraction 2.6774 2.726 -- 168 3634 0.1762 0.2367 -- 95.0
X Ray Diffraction 2.726 2.7783 -- 196 3662 0.171 0.2359 -- 95.0
X Ray Diffraction 2.7783 2.8349 -- 193 3638 0.1682 0.2415 -- 95.0
X Ray Diffraction 2.8349 2.8963 -- 177 3619 0.1658 0.2337 -- 94.0
X Ray Diffraction 2.8963 2.9635 -- 202 3655 0.158 0.2105 -- 95.0
X Ray Diffraction 2.9635 3.0373 -- 204 3657 0.1631 0.217 -- 94.0
X Ray Diffraction 3.0373 3.1192 -- 198 3612 0.1594 0.2035 -- 94.0
X Ray Diffraction 3.1192 3.2106 -- 193 3638 0.1595 0.2105 -- 94.0
X Ray Diffraction 3.2106 3.3137 -- 203 3653 0.1614 0.2022 -- 94.0
X Ray Diffraction 3.3137 3.4316 -- 192 3603 0.1651 0.2281 -- 94.0
X Ray Diffraction 3.4316 3.5682 -- 212 3587 0.154 0.1885 -- 93.0
X Ray Diffraction 3.5682 3.7296 -- 198 3644 0.1402 0.1794 -- 94.0
X Ray Diffraction 3.7296 3.9248 -- 188 3619 0.1345 0.1652 -- 93.0
X Ray Diffraction 3.9248 4.1686 -- 195 3612 0.1245 0.1788 -- 93.0
X Ray Diffraction 4.1686 4.487 -- 194 3613 0.1183 0.1531 -- 92.0
X Ray Diffraction 4.487 4.9322 -- 186 3599 0.116 0.1569 -- 92.0
X Ray Diffraction 4.9322 5.6315 -- 192 3581 0.1404 0.1877 -- 91.0
X Ray Diffraction 5.6315 7.0419 -- 201 3618 0.1687 0.1872 -- 90.0
X Ray Diffraction 7.0419 19.8206 -- 193 3677 0.1862 0.1946 -- 89.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 0.3053
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.3053
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.6107
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.005
f_chiral_restr 0.073
f_dihedral_angle_d 14.271
f_angle_d 1.033
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13974
Nucleic Acid Atoms 0
Heterogen Atoms 526
Solvent Atoms 1545

Software

Computing
Computing Package Purpose
PHENIX (phenix.refine: 1.7_650) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7_650) refinement