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X-RAY DIFFRACTION
Materials and Methods page
4DC1
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 6.6
    Temperature 298.0
    Details 0.1 M Bis-Tris Propane, 2.6 M ammonium sulfate, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 104.2 α = 90
    b = 104.2 β = 90
    c = 123.29 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2008-11-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.2.2
    Wavelength List 1.0332
    Site ALS
    Beamline 8.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.82
    Resolution(Low) 50
    Number Reflections(Observed) 18227
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.82
    Resolution(Low) 42.373
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 18227
    Number of Reflections(R-Free) 943
    Percent Reflections(Observed) 95.36
    R-Factor(Observed) 0.1896
    R-Work 0.1866
    R-Free 0.2466
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 3.1416
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 3.1416
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.2832
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.82
    Shell Resolution(Low) 2.9687
    Number of Reflections(R-Free) 135
    Number of Reflections(R-Work) 2305
    R-Factor(R-Work) 0.2017
    R-Factor(R-Free) 0.2667
    Percent Reflections(Observed) 92.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9687
    Shell Resolution(Low) 3.1547
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 2423
    R-Factor(R-Work) 0.1768
    R-Factor(R-Free) 0.2805
    Percent Reflections(Observed) 95.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1547
    Shell Resolution(Low) 3.3981
    Number of Reflections(R-Free) 134
    Number of Reflections(R-Work) 2371
    R-Factor(R-Work) 0.1782
    R-Factor(R-Free) 0.2256
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3981
    Shell Resolution(Low) 3.7399
    Number of Reflections(R-Free) 130
    Number of Reflections(R-Work) 2390
    R-Factor(R-Work) 0.2019
    R-Factor(R-Free) 0.2795
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7399
    Shell Resolution(Low) 4.2807
    Number of Reflections(R-Free) 131
    Number of Reflections(R-Work) 2473
    R-Factor(R-Work) 0.1955
    R-Factor(R-Free) 0.2565
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2807
    Shell Resolution(Low) 5.3914
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2607
    R-Factor(R-Work) 0.1686
    R-Factor(R-Free) 0.2161
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3914
    Shell Resolution(Low) 42.373
    Number of Reflections(R-Free) 136
    Number of Reflections(R-Work) 2715
    R-Factor(R-Work) 0.19
    R-Factor(R-Free) 0.2328
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.067
    f_dihedral_angle_d 18.803
    f_angle_d 1.178
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3804
    Nucleic Acid Atoms 0
    Heterogen Atoms 96
    Solvent Atoms 39
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CCP4
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building CCP4