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X-RAY DIFFRACTION
Materials and Methods page
4DC0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8.3
    Temperature 298.0
    Details 0.1 M Tris-Cl, 2.2 M ammonium sulfate, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 103.53 α = 90
    b = 103.53 β = 90
    c = 123.23 γ = 120
     
    Space Group
    Space Group Name:    P 32 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 315r
    Collection Date 2008-11-11
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.2.2
    Wavelength List 1.0332
    Site ALS
    Beamline 8.2.2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.81
    Resolution(Low) 50
    Number Reflections(Observed) 18465
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.813
    Resolution(Low) 42.128
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 18465
    Number of Reflections(R-Free) 956
    Percent Reflections(Observed) 97.07
    R-Factor(Observed) 0.1912
    R-Work 0.1883
    R-Free 0.246
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 4.8432
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 4.8432
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -9.6864
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.813
    Shell Resolution(Low) 2.9612
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2347
    R-Factor(R-Work) 0.2245
    R-Factor(R-Free) 0.3054
    Percent Reflections(Observed) 93.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9612
    Shell Resolution(Low) 3.1467
    Number of Reflections(R-Free) 122
    Number of Reflections(R-Work) 2419
    R-Factor(R-Work) 0.1993
    R-Factor(R-Free) 0.31
    Percent Reflections(Observed) 94.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.1467
    Shell Resolution(Low) 3.3896
    Number of Reflections(R-Free) 145
    Number of Reflections(R-Work) 2407
    R-Factor(R-Work) 0.1861
    R-Factor(R-Free) 0.2304
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.3896
    Shell Resolution(Low) 3.7305
    Number of Reflections(R-Free) 142
    Number of Reflections(R-Work) 2496
    R-Factor(R-Work) 0.1688
    R-Factor(R-Free) 0.2519
    Percent Reflections(Observed) 98.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7305
    Shell Resolution(Low) 4.2698
    Number of Reflections(R-Free) 127
    Number of Reflections(R-Work) 2539
    R-Factor(R-Work) 0.1746
    R-Factor(R-Free) 0.2298
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.2698
    Shell Resolution(Low) 5.3778
    Number of Reflections(R-Free) 144
    Number of Reflections(R-Work) 2585
    R-Factor(R-Work) 0.1698
    R-Factor(R-Free) 0.212
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.3778
    Shell Resolution(Low) 42.128
    Number of Reflections(R-Free) 138
    Number of Reflections(R-Work) 2716
    R-Factor(R-Work) 0.2145
    R-Factor(R-Free) 0.2634
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_plane_restr 0.004
    f_chiral_restr 0.065
    f_dihedral_angle_d 20.079
    f_angle_d 1.162
    f_bond_d 0.008
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 3812
    Nucleic Acid Atoms 0
    Heterogen Atoms 96
    Solvent Atoms 37
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) HKL-2000
    Structure Solution CCP4
    Structure Refinement PHENIX (phenix.refine: 1.7_650)
     
    Software
    refinement PHENIX version: (phenix.refine: 1.7_650)
    model building CCP4