X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6.5
Temperature 293.0
Details 25% PEG ME 550, 0.1M MES, 0.01M Zinc sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.41 α = 90
b = 41.54 β = 94.08
c = 73.12 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2010-06-11
Diffraction Radiation
Monochromator Protocol
MIRRORS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.79 32.75 99.15 -- -- -- -- 41028 41028 0.0 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.789 32.751 -- 0.0 41028 41028 2062 99.15 0.1973 0.1973 0.1953 0.2359 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7893 1.831 -- 112 2281 0.3642 0.375 -- 88.0
X Ray Diffraction 1.831 1.8767 -- 168 2576 0.3021 0.3043 -- 100.0
X Ray Diffraction 1.8767 1.9275 -- 137 2569 0.279 0.331 -- 100.0
X Ray Diffraction 1.9275 1.9842 -- 138 2614 0.2446 0.2852 -- 100.0
X Ray Diffraction 1.9842 2.0482 -- 145 2603 0.226 0.2672 -- 100.0
X Ray Diffraction 2.0482 2.1214 -- 154 2572 0.2215 0.2646 -- 100.0
X Ray Diffraction 2.1214 2.2063 -- 130 2626 0.2069 0.2504 -- 100.0
X Ray Diffraction 2.2063 2.3067 -- 128 2613 0.1961 0.243 -- 100.0
X Ray Diffraction 2.3067 2.4283 -- 133 2601 0.1904 0.2626 -- 100.0
X Ray Diffraction 2.4283 2.5804 -- 139 2629 0.2014 0.2691 -- 100.0
X Ray Diffraction 2.5804 2.7795 -- 139 2630 0.2011 0.2242 -- 100.0
X Ray Diffraction 2.7795 3.0591 -- 136 2606 0.1989 0.3025 -- 100.0
X Ray Diffraction 3.0591 3.5013 -- 137 2643 0.1962 0.2443 -- 100.0
X Ray Diffraction 3.5013 4.4095 -- 126 2669 0.1574 0.1984 -- 100.0
X Ray Diffraction 4.4095 32.7564 -- 140 2734 0.1677 0.1663 -- 100.0
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] 9.31
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -3.8325
Anisotropic B[2][2] -2.7631
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -6.5469
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.004
f_chiral_restr 0.07
f_dihedral_angle_d 13.494
f_angle_d 1.022
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3319
Nucleic Acid Atoms 0
Heterogen Atoms 67
Solvent Atoms 129

Software

Computing
Computing Package Purpose
CBASS Data Collection
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
phenix Structure Solution
PHENIX (phenix.refine: 1.7.1_743) Structure Refinement
Software
Software Name Purpose
PHENIX version: (phenix.refine: 1.7.1_743) refinement
phenix model building
CBASS data collection