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X-RAY DIFFRACTION
Materials and Methods page
4D8D
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.4
    Temperature 293.0
    Details 0.3 M sodium potassium tartrate, 0.5 M bicine buffer , 1cmc D-octylglucopyranoside, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 108.01 α = 90
    b = 108.01 β = 90
    c = 224.96 γ = 120
     
    Space Group
    Space Group Name:    P 65 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector AREA DETECTOR
    Type MARRESEARCH
    Collection Date 2000-04-27
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE BM30A
    Wavelength List 0.98064
    Site ESRF
    Beamline BM30A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.52
    Resolution(Low) 58.51
    Number Reflections(All) 27024
    Number Reflections(Observed) 26791
    Percent Possible(Observed) 99.14
    B(Isotropic) From Wilson Plot 73.99
    Redundancy 7.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5201
    Resolution(Low) 52.513
    Cut-off Sigma(I) 0.0
    Cut-off Sigma(F) 1.4
    Number of Reflections(all) 27024
    Number of Reflections(Observed) 26778
    Number of Reflections(R-Free) 1350
    Percent Reflections(Observed) 99.1
    R-Factor(Observed) 0.2135
    R-Work 0.2121
    R-Free 0.2376
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 83.287
    Anisotropic B[1][1] -6.1391
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -6.1391
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 12.2782
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5201
    Shell Resolution(Low) 2.6102
    Number of Reflections(R-Free) 110
    Number of Reflections(R-Work) 2407
    R-Factor(R-Work) 0.3377
    R-Factor(R-Free) 0.3414
    Percent Reflections(Observed) 96.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6102
    Shell Resolution(Low) 2.7147
    Number of Reflections(R-Free) 132
    Number of Reflections(R-Work) 2510
    R-Factor(R-Work) 0.2825
    R-Factor(R-Free) 0.3421
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7147
    Shell Resolution(Low) 2.8382
    Number of Reflections(R-Free) 133
    Number of Reflections(R-Work) 2483
    R-Factor(R-Work) 0.2593
    R-Factor(R-Free) 0.2893
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.8382
    Shell Resolution(Low) 2.9878
    Number of Reflections(R-Free) 157
    Number of Reflections(R-Work) 2449
    R-Factor(R-Work) 0.2242
    R-Factor(R-Free) 0.2872
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9878
    Shell Resolution(Low) 3.175
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2505
    R-Factor(R-Work) 0.2177
    R-Factor(R-Free) 0.2658
    Percent Reflections(Observed) 99.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.175
    Shell Resolution(Low) 3.4201
    Number of Reflections(R-Free) 125
    Number of Reflections(R-Work) 2536
    R-Factor(R-Work) 0.2154
    R-Factor(R-Free) 0.2636
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.4201
    Shell Resolution(Low) 3.7642
    Number of Reflections(R-Free) 120
    Number of Reflections(R-Work) 2577
    R-Factor(R-Work) 0.1992
    R-Factor(R-Free) 0.2434
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.7642
    Shell Resolution(Low) 4.3087
    Number of Reflections(R-Free) 156
    Number of Reflections(R-Work) 2558
    R-Factor(R-Work) 0.1859
    R-Factor(R-Free) 0.2265
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 4.3087
    Shell Resolution(Low) 5.4276
    Number of Reflections(R-Free) 141
    Number of Reflections(R-Work) 2630
    R-Factor(R-Work) 0.1753
    R-Factor(R-Free) 0.1923
    Percent Reflections(Observed) 100.0
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 5.4276
    Shell Resolution(Low) 52.5244
    Number of Reflections(R-Free) 151
    Number of Reflections(R-Work) 2773
    R-Factor(R-Work) 0.2315
    R-Factor(R-Free) 0.2268
    Percent Reflections(Observed) 99.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    f_dihedral_angle_d 13.947
    f_plane_restr 0.005
    f_chiral_restr 0.07
    f_angle_d 0.977
    f_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2724
    Nucleic Acid Atoms 0
    Heterogen Atoms 6
    Solvent Atoms 44
     
     
  •   Software and Computing Hide
    Computing
    Data Collection MOSFLM
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) SCALA
    Structure Solution MOLREP
    Structure Refinement PHENIX (phenix.refine: 1.7.3_928)
     
    Software
    data extraction pdb_extract version: 3.10
    refinement phenix